Pairwise Alignments

Query, 314 a.a., putative nifR3 family TIM-barrel enzyme with dihydrouridine synthase domain (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 328 a.a., tRNA-dihydrouridine synthase from Azospirillum brasilense Sp245

 Score = 83.6 bits (205), Expect = 6e-21
 Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 15/271 (5%)

Query: 6   PIHFAPLQGYTEAIYRN-AHDAFFGGVDTYYTPFVRLEKGNFRRRDVRGIEPENNGVPHL 64
           P+  AP+ G T+  +R     +  G V +       + + N  R+ +R +E E    P  
Sbjct: 13  PVILAPMSGVTDLPFRRLVKQSGCGLVVSEMVASQAMIREN--RQTLRMVECEPEQFPMA 70

Query: 65  IPQLIASSAEKAEVILSLFIEKGYQEVDINLGCPFPLLAKRHNGSGILPYPEEVKALLSI 124
           + QL     +       L  ++G   +DIN GCP   +   H GS ++        +L  
Sbjct: 71  V-QLAGCEPDVMAEAAKLNEDRGAAIIDINFGCPVKKVVNGHAGSSLMRDEALAARILEA 129

Query: 125 VTRYPQISFSVKMRLGWEQPD-ECLALAPILNDLPLRQITMHPRLGKQGYKGEVDLQGFS 183
             +   I  ++KMR GW+        LA I  +  ++ +T+H R  +Q Y G  D     
Sbjct: 130 TAKAVSIPVTLKMRKGWDDNSLNAPRLARIAEECGIKLVTVHGRTREQFYNGTADWSFIR 189

Query: 184 AFREVCQLPLVYNGDIHNLEDIQRISTQFPSLAGIMIGRGLLAN---PALALEYKENRTL 240
           + +E   +P+V NGDI + + + R   +     G+MIGRG       PA  + Y      
Sbjct: 190 SVKEAVSIPVVVNGDITSFDAVDRALAE-SGADGVMIGRGAYGRPWFPAQVMHYIRTGER 248

Query: 241 APD----EMRDRLKSMHKSVYNNYDVLLEGG 267
            PD    E  D L   + ++  +Y V  EGG
Sbjct: 249 LPDPPLHEQLDTLLEHYDAMLTHYGV--EGG 277