Pairwise Alignments

Query, 314 a.a., putative nifR3 family TIM-barrel enzyme with dihydrouridine synthase domain (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 334 a.a., Dihydrouridine synthase TIM-barrel protein nifR3 from Synechococcus elongatus PCC 7942

 Score = 92.8 bits (229), Expect = 1e-23
 Identities = 70/231 (30%), Positives = 107/231 (46%), Gaps = 16/231 (6%)

Query: 66  PQLIASSAEKAEVILSLFIEKGYQEVDINLGCPFPLLAKRHNGSGILPYPEEVKALLSIV 125
           P  +A++A++AE         G   +D+N+GCP   + ++  GS +L  PE   A++  V
Sbjct: 91  PATLAAAAQQAEAA-------GAVCIDLNMGCPVSKVTRKRGGSALLREPELAIAIVQAV 143

Query: 126 TRYPQISFSVKMRLGWEQPDECLALAPILNDLPLRQITMHPRLGKQGYKGEVDLQGFSAF 185
                I  +VK RLGWEQ    L  A  L     + +T+H R   QGY G+ D    +  
Sbjct: 144 AAAVSIPVTVKTRLGWEQV-TILDFAQQLEAAGAQLLTLHGRSRSQGYSGQADWNWITRV 202

Query: 186 REVCQLPLVYNGDIHNLEDIQRISTQFPSLAGIMIGRGLLANP----ALALEYKENRTLA 241
           +    +P++ NGDI++  D      Q     G+M GRG L NP    A+    K      
Sbjct: 203 KSRLSIPVIANGDINSPADAIACLQQ-TGADGVMCGRGSLGNPGLVGAIDRSLKTGEQTP 261

Query: 242 PDEMRDRLKSMHKSVYNNYDVLLEGGEGQLLTKMKTFWEYLAPQTDRKVLK 292
             E+RDRL+   + +   ++   + G   LL   K    YLA Q D + L+
Sbjct: 262 ELELRDRLQLAREHLLLLWE---DKGAAGLLQARKHLGWYLADQPDYQDLR 309