Pairwise Alignments

Query, 314 a.a., putative nifR3 family TIM-barrel enzyme with dihydrouridine synthase domain (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 337 a.a., tRNA-dihydrouridine synthase DusB from Phaeobacter inhibens DSM 17395

 Score = 85.9 bits (211), Expect = 1e-21
 Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 14/236 (5%)

Query: 4   TLPIHFAPLQGYTEAIYRNAHDAFFGGV---DTYYTPFVRLEKGNFRRRDVRGIEPENNG 60
           T PI  AP+ G T+  +R+   +F  G+   +   +  +   K   R R     + EN  
Sbjct: 11  TPPIALAPMAGITDRPFRDLVRSFGAGLMVSEMVASQEMVQAKPGVRERAELSADVENTA 70

Query: 61  VPHLIPQLIASSAEKAEVILSLFIEKGYQEVDINLGCPFPLLAKRHNGSGILPYPEEVKA 120
           V  +  +     AE A  + S    +G + +DIN+GCP   +   ++GS +L  P+   +
Sbjct: 71  V-QIAGRDAYWMAEAARQVES----RGAKVIDINMGCPAKKVTNGYSGSALLKTPDHALS 125

Query: 121 LLSIVTRYPQISFSVKMRLGWEQPDECLALAPI---LNDLPLRQITMHPRLGKQGYKGEV 177
           L+  V     +  ++K RLGW+  D  L  A +     D  ++ +T+H R   Q YKG  
Sbjct: 126 LIEAVVAAVSVPVTLKTRLGWD--DNSLNAADVARRAQDAGVQMVTIHGRTRCQFYKGTA 183

Query: 178 DLQGFSAFREVCQLPLVYNGDIHNLEDIQRISTQFPSLAGIMIGRGLLANPALALE 233
           D +  +A +    +PL+ NGDI +    +    Q     G+MIGRG+   P L  E
Sbjct: 184 DWKAIAAVKTALNVPLLANGDIVDTATARTALAQ-SGADGVMIGRGVQGKPWLLAE 238