Pairwise Alignments

Query, 314 a.a., putative nifR3 family TIM-barrel enzyme with dihydrouridine synthase domain (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 309 a.a., dihydrouridine synthase, DuS (RefSeq) from Shewanella loihica PV-4

 Score = 80.5 bits (197), Expect = 5e-20
 Identities = 65/248 (26%), Positives = 113/248 (45%), Gaps = 24/248 (9%)

Query: 10  APLQGYTEAIYRNAHDAFFGGVDTYYTPFVRL------EKGNFRR-RDVRGIEPENNGVP 62
           AP++G  +A  R A     GG D   + F+R+      EK  +R   +++      +G P
Sbjct: 6   APMEGVADAPMR-ALLTSVGGYDMVISEFIRVVDQLLPEKVFYRLCAELKYQCRTASGTP 64

Query: 63  HLI------PQLIASSAEKAEVILSLFIEKGYQEVDINLGCPFPLLAKRHNGSGILPYPE 116
             +      P  +A +A +A       +E G + VD+N GCP P++ +   G+ +L  PE
Sbjct: 65  VRLQLLGQEPNWMAENAIRA-------VELGSRGVDLNYGCPAPMVNRSKGGAALLKEPE 117

Query: 117 EVKALLSIVTRY--PQISFSVKMRLGWEQPDECLALAPILNDLPLRQITMHPRLGKQGYK 174
            +  +   V +        S K+RLGW+    C  +A  +      ++T+H R  ++ Y+
Sbjct: 118 TIYRVTQAVRQAVPKDKPVSAKIRLGWDDKSRCTEIAQAIEAAGATELTVHARTKEEAYR 177

Query: 175 GEVDLQGFSAFREVCQLPLVYNGDIHNLEDIQRISTQFPSLAGIMIGRGLLANPALALEY 234
                +  +  + V +LP++ NG+I   ED  +   +      +M+GRG L  P LA   
Sbjct: 178 PPAHWEYIAQIKSVTRLPIIANGEIWGREDYLK-CREASGCDDVMLGRGALTIPNLAHVV 236

Query: 235 KENRTLAP 242
           K  +T  P
Sbjct: 237 KGEQTPMP 244