Pairwise Alignments

Query, 314 a.a., putative nifR3 family TIM-barrel enzyme with dihydrouridine synthase domain (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 322 a.a., nifR3 family TIM-barrel protein (RefSeq) from Shewanella loihica PV-4

 Score = 87.4 bits (215), Expect = 4e-22
 Identities = 61/235 (25%), Positives = 110/235 (46%), Gaps = 8/235 (3%)

Query: 84  IEKGYQEVDINLGCPFPLLAKRHNGSGILPYPEEVKALLSIVTRYPQISFSVKMRLGW-E 142
           +++G Q +DIN+GCP   + K+  GS +L  PE VKA+L  V     +  ++K+R GW  
Sbjct: 87  VQQGAQIIDINMGCPAKKVNKKLAGSALLQQPELVKAILQAVVAAVDVPVTLKIRTGWAP 146

Query: 143 QPDECLALAPILNDLPLRQITMHPRLGKQGYKGEVDLQGFSAFREVCQLPLVYNGDIHNL 202
           +    + +A I  D  +  + +H R  +  YKG+ +     A ++   +P+V NGDI   
Sbjct: 147 EHRNGVHIAQIAQDCGIASLAVHGRTRQCMYKGDAEYDTIRAIKQNVSIPVVANGDICTP 206

Query: 203 EDIQRISTQFPSLAGIMIGRGLLANPALALEYKE----NRTLAPDEMRDRLKSMHKSVYN 258
           E  + +   +     +MIGRG    P L  E +        LAP E+ ++ + M + + N
Sbjct: 207 EKARSV-LDYTGADAVMIGRGAQGRPWLFREIQHYLETGNKLAPIEVDEKRQVMLEHLKN 265

Query: 259 NYDVLLEGGEGQLLTKMKTFWEYLAPQTDRKVLKAIHKSTNISKYYQAVSAFFNQ 313
            Y  L    +G  + +    W YL  +  R      ++   + +    +  +F++
Sbjct: 266 LY-ALYGEYKGLRIARKHVGW-YLDQEAQRSFRADFNRLETVEEQRSMLERYFDE 318