Pairwise Alignments

Query, 314 a.a., putative nifR3 family TIM-barrel enzyme with dihydrouridine synthase domain (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 326 a.a., dihydrouridine synthase from Cupriavidus basilensis FW507-4G11

 Score = 70.9 bits (172), Expect = 4e-17
 Identities = 61/238 (25%), Positives = 103/238 (43%), Gaps = 12/238 (5%)

Query: 7   IHFAPLQGYTEAIYRNAHDAFFGGVDTYYTPFVRLEKGNFRRRDVRGIEPE-------NN 59
           +  AP++G  + + R+      GG D   + FVR+       R      PE         
Sbjct: 4   LFLAPMEGLADYVLRDVLTGS-GGYDGCVSEFVRVTGSLLPERVYERDTPEILHGGHTPG 62

Query: 60  GVPHLIPQLIASSAEKAEVILSLFIEKGYQEVDINLGCPFPLLAKRHNGSGILPYPEEV- 118
           G P +I QL+ S  E   V  +         +D+N GCP  ++ +   G+ +L  PE + 
Sbjct: 63  GTPMVI-QLLGSDPEWLAVNAAQAATVSPHGIDLNFGCPAKVVNRHGGGAMLLADPELLN 121

Query: 119 KALLSIVTRYP-QISFSVKMRLGWEQPDECLALAPILNDLPLRQITMHPRLGKQGYKGEV 177
           + +LS+    P  I+ + KMRLG       +  A  L +     + +H R    GY+   
Sbjct: 122 RIVLSVRAAVPANIAVTAKMRLGVSDTALAIDCATALAEGGAASLVVHARTRDHGYRPPA 181

Query: 178 DLQGFSAFREVCQLPLVYNGDIHNLEDIQRISTQFPSLAGIMIGRGLLANPALALEYK 235
             +  +       +P+V NG++  + D +R        A +MIGRG +++P LAL  +
Sbjct: 182 HWEWIARIDAAVDVPVVANGEVWTVADWERCRA-VSGCADVMIGRGAVSDPFLALRIR 238