Pairwise Alignments

Query, 949 a.a., DNA polymerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 955 a.a., DNA polymerase from Azospirillum brasilense Sp245

 Score =  572 bits (1474), Expect = e-167
 Identities = 357/973 (36%), Positives = 534/973 (54%), Gaps = 73/973 (7%)

Query: 7   LFLLDAYALIYRAYYAFIKNPRINSK-GFNTSAILGFVNTLEEVLKKENPSHIGVAFDPS 65
           L+L+D    I+RA++A    P +N   G   +A+LGF N L ++L     S + V FD  
Sbjct: 26  LYLVDGSGFIFRAFHAL---PMLNRPDGTPVNAVLGFSNMLLKLLADLKASAVAVVFDSK 82

Query: 66  GPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIHAYRIPILEVAGYEADDVIGTLATEA 125
              FR+E + +YKA R E PE ++    +I++   A+ +P LE+ GYEADD+I T A  A
Sbjct: 83  RLNFRNEFYPEYKAHRPEPPEELKPQFALIREATEAFCLPCLELEGYEADDLIATYARLA 142

Query: 126 GRQGITTYMMTPDKDYGQLVTDNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPAQVIDMLG 185
              G    +++ DKD  QLV   V M  P      + +G +EV  KF + +P +V+D+  
Sbjct: 143 NEAGREVTIVSSDKDMMQLVRPGVRMLDPLKN---KPIGPDEVFEKFGV-APDRVVDVQA 198

Query: 186 LMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKG-ALKTKVETNKELITFSK 244
           L GD+ DN+PG PG+G KTA +LI E+G +E+LL    ++K  A + K+    E    S+
Sbjct: 199 LAGDSVDNVPGVPGIGVKTAAQLITEYGDLESLLARAGEIKQPARRQKLIDFAEQARISR 258

Query: 245 FLATIKIDVPIQLEMDKLVREQADEDSLRQIFEELEFRTLIDRV---LKKENSAGGVTMA 301
            L  +    P    +++L   + D   L        FRT++ RV   ++K+ +     + 
Sbjct: 259 RLVLLDDHAPPPKPLEELRVREPDHQKLIDFLRAQGFRTIVSRVEAEMRKDGTIADGAVP 318

Query: 302 TGSKTATAKSAPSPLPLFPEEGGAIQGDLFANFTGNEAGEAKKSNLETLETLNCDYQLID 361
           + +  A    AP   P  P +                              +   Y+L+ 
Sbjct: 319 SSATPAAEVGAPRSRPAPPTD------------------------------VEQRYELVQ 348

Query: 362 TEKKRAEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSITENQAFYVPVPDNR----- 416
                A  +++  T+ +L++DTET    P  A LVG+S +     A Y+P+         
Sbjct: 349 DLDALAVWLERARTTGVLAVDTETNSLTPATATLVGISLATEPGLACYIPLAHQAPNAAA 408

Query: 417 -----------------EEALKIVNEFRPVFENENSLKVGQNIKYDMIVLENYGVQVKGA 459
                            E+ALK + E   V E+   LK+G N K+D  +   +GV+V   
Sbjct: 409 SGELSFETPEAPKQIPAEDALKALKE---VLEDPAILKIGHNFKFDHQLFARHGVRVS-P 464

Query: 460 LFDTMIAHYVLQPELR-HGMDYLAEIYLHYQTIHIDELIGPKGKNQKNMRDLDPKDIYRY 518
           + D+M+  YVL+     HGMD LAE++L + TI   E+ G  GKNQ     +       Y
Sbjct: 465 VDDSMLISYVLEGGAHGHGMDELAELHLAHTTIPYKEVCGT-GKNQITFDRVPLDKALAY 523

Query: 519 ACEDADVTLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVH 578
           A EDAD+TL+L   L+  L +     ++  +E PLVPV+ ++E  G+ +D  AL + S  
Sbjct: 524 AAEDADITLRLWRALKPRLVDERMVTVYETLERPLVPVIADMESCGIRVDRAALARLSQD 583

Query: 579 FTAQMQRIEQEIYELAGETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESL 638
              +M  IE+E+++ AG +FNI SPKQ+GE+LFD+++ +   KK KTG Y T   VLE L
Sbjct: 584 LAVRMAEIEKEVHQHAGRSFNIGSPKQLGEILFDEMK-LGTGKKGKTGAYSTDSSVLEEL 642

Query: 639 RHK-HPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTVTSTGRLSSSNPNL 697
             + H + +++L+ R L KL  TY DAL   I   + RVHT+F    T+TGRLSS++PNL
Sbjct: 643 AEQGHVIAQRVLDWRQLAKLKNTYTDALQAQIVEGSERVHTAFAMAATNTGRLSSTDPNL 702

Query: 698 QNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHDIHAA 757
           QNIP+R E G++IR+AF+   G    S DYSQIELR++A +++   +  AF    DIHAA
Sbjct: 703 QNIPVRTEEGRKIRRAFVAAPGHKLISIDYSQIELRLVAEMADIAALKQAFQDGIDIHAA 762

Query: 758 TAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYP 817
           TA++++ + L  + S++RRKAK  NFGIIYGIS FGL  ++ +   EA   I  YFE + 
Sbjct: 763 TASQVFGVPLDQMTSEIRRKAKAINFGIIYGISGFGLGRQLGIAPGEANAFIKAYFERFH 822

Query: 818 SVKAYMEKSIQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAINAPIQGSAADII 877
            +K +ME +   A++ G+V T+F R+ ++P I+ +NA  R +AER AINAPIQG+AADI+
Sbjct: 823 ELKLWMEATKAFARQNGHVVTLFGRRCYIPGIHDKNAARRAFAERQAINAPIQGTAADIM 882

Query: 878 KVAMARIYQRFQTEGI-QAKMILQVHDELNFSVPVNEKERVEEIVIEEMEHAYRMHVPLK 936
           K AMAR+    +  G  + +M+LQVHDEL F  P ++ ER   +V + ME A  + VPL 
Sbjct: 883 KRAMARVPGALKEAGFDEVRMLLQVHDELLFEAPEDQAERAAALVRQVMEGAATLGVPLV 942

Query: 937 ADCGWGKNWLEAH 949
           A+ G G NW EAH
Sbjct: 943 AEAGIGGNWDEAH 955