Pairwise Alignments

Query, 949 a.a., DNA polymerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 953 a.a., DNA polymerase I from Synechococcus elongatus PCC 7942

 Score =  563 bits (1452), Expect = e-164
 Identities = 353/983 (35%), Positives = 539/983 (54%), Gaps = 79/983 (8%)

Query: 7   LFLLDAYALIYRAYYAFIKNPRINSK---GFNTSAILGFVNTLEEVLKKENPSHIGVAFD 63
           L L+D ++L +R+YYAF K      +   G  TS   GF+  L EV++++ P  + +AFD
Sbjct: 8   LLLVDGHSLAFRSYYAFAKGRDGGLRTRTGIPTSVCFGFLKALLEVMEQQQPKALAIAFD 67

Query: 64  PSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIHAYRIPILEVAGYEADDVIGTLAT 123
             GPTFRHEA E YKA R+E PE  ++    +  ++    +PIL   GYEADD++GT+A 
Sbjct: 68  LGGPTFRHEADENYKANRDEAPEDFKIDTDNLVALLQTLNLPILVEPGYEADDLLGTVAQ 127

Query: 124 EAGRQGITTYMMTPDKDYGQLVTDNVFMYRPKHTGG-FEVMGIEEVKAKFDIQS------ 176
                G    +++ D+D  QLV D     R  + G  F      E   + D  +      
Sbjct: 128 RGAEAGYRVRILSGDRDLFQLV-DPEGAIRVLYLGNTFGRSANREAAREIDPAAVIDKLG 186

Query: 177 --PAQVIDMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTKVE 234
             P QVID   L GD+SDNIPG  G+G KTA  L+  +G ++ + ++ + +K A++ K+E
Sbjct: 187 VPPEQVIDFKALCGDSSDNIPGVKGIGPKTAVDLLQAWGDLDRIYDNLEAIKPAVRKKLE 246

Query: 235 TNKELITFSKFLATIKIDVPIQLEMDKLVREQADEDSLRQIFEELEFRTLIDRVLKKENS 294
           +++E    S+ LA I  D+P+ ++ D       DE  +    E+LE +    +V + +  
Sbjct: 247 SDREAAYHSRKLAQIVTDIPLAIDWDHYALTGFDEQEVLPWLEKLELQAFRRQVDRLQQL 306

Query: 295 AGGVTMATGSKTATAKSAPSPLPLFPEEGGAIQGDLFANFTGNEAGEAKKSNLETLETLN 354
            GG               P  +    +E          +F   E   A++     L+   
Sbjct: 307 FGG--------------QPPTVEALSDES--------LDFWTAEETAAQQPRWPQLQP-- 342

Query: 355 CDYQLIDTEKKRAEII----QKLLTSKILSLDTETTGTEPMDAELVGMSFSITE--NQAF 408
              Q+I T     +++    Q+     I++ DTETT  +P  A+LVG+  +  E  +Q  
Sbjct: 343 ---QIITTAAALTDLVTLLEQRDSPEAIVAWDTETTDLDPRLAQLVGIGCAWGEEPDQLA 399

Query: 409 YVPVPDNREEALK---IVNEFRPVFENENSLKVGQNIKYDMIVLENYGVQVKGALFDTMI 465
           Y+P+     E L    ++   RP+ E++   K  QN K+D ++L + G+++ G +FDTM+
Sbjct: 400 YIPLGHEEGEQLPLQTVLTALRPILESDRHPKALQNAKFDRLILRHQGIELAGVVFDTML 459

Query: 466 AHYVLQPELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQKNMRDLDPKDIYRYACEDADV 525
           A Y+L P L H +D LA+ +L  QT    +L+ PKGK    +  +    + +Y   D  V
Sbjct: 460 ASYLLNPSLGHSLDALADRWLKLQTRSYSDLV-PKGKT---IAQVAIAAVAQYCGSDVHV 515

Query: 526 TLKLKNVLEKELKENDA-ERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQ 584
             +L  +L+  + E+ A + L   +E+PL  VL  +E  G+ +D   L + S H   ++ 
Sbjct: 516 VQRLIPLLKAGIAESPALQFLLETVELPLEAVLAEMEDRGIRIDEGYLAELSEHLKGELD 575

Query: 585 RIEQEIYELAGETFNIASPKQVGEVLFDKLRI-IEKAKKTKTGQYVTSEEVLESLRHKHP 643
           R+E   + LAG+ FN+ SPKQ+ E+LF+KL + ++K++KTKTG Y T   VLE L+  HP
Sbjct: 576 RLEGAAHTLAGDRFNLGSPKQLSELLFEKLGLNVKKSRKTKTG-YSTDAAVLEKLQGDHP 634

Query: 644 VVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTVTSTGRLSSSNPNLQNIPIR 703
           +++ ILEHR L KL  TY+DALP L+    GR+HT FNQ VT+TGRLSSSNPNLQNIPIR
Sbjct: 635 IIDLILEHRTLAKLKSTYVDALPSLV-AADGRIHTDFNQAVTATGRLSSSNPNLQNIPIR 693

Query: 704 DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHDIHAATAAKIY 763
            E  ++IRKAF+P EG L  +ADYSQIELRI+AHLS++  +++A+    D+H  TA+ ++
Sbjct: 694 TEFSRQIRKAFLPREGWLLAAADYSQIELRILAHLSQEPVLLEAYRQGDDVHRLTASLLF 753

Query: 764 KIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPSVKAYM 823
             D +++ S+ RR  K  NFG+IYG+     A       KEA+  ID +++ YP V  Y+
Sbjct: 754 --DREEITSEERRIGKIINFGVIYGMGAQRFARETGSSTKEAQGFIDRFYDRYPRVFTYL 811

Query: 824 EKSIQIAQEKGYVETIFHRKRFLPDINSRNAVVRG------------------YAERNAI 865
           +   + A  +GYVET+  R+R+    ++    +RG                     R A 
Sbjct: 812 QSLERQAIARGYVETVLGRRRYFDFEDTGLQKLRGSDPESIDLDKIRPSRFEAQLLRAAA 871

Query: 866 NAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEEM 925
           NAPIQGS+ADIIKVAM ++    Q+   QA+M+LQVHDEL   +P  E + +   + + M
Sbjct: 872 NAPIQGSSADIIKVAMVQLQALLQS--YQARMLLQVHDELVLELPPEEWDSLAPQIQQTM 929

Query: 926 EHAYRMHVPLKADCGWGKNWLEA 948
           E A ++ VPL  +   G NW+EA
Sbjct: 930 EQAVQLTVPLAVELHAGHNWMEA 952