Pairwise Alignments

Query, 949 a.a., DNA polymerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 923 a.a., DNA-directed DNA polymerase (RefSeq) from Shewanella amazonensis SB2B

 Score =  684 bits (1766), Expect = 0.0
 Identities = 403/967 (41%), Positives = 570/967 (58%), Gaps = 68/967 (7%)

Query: 3   SDNKLFLLDAYALIYRAYYAFIKNPRI-NSKGFNTSAILGFVNTLEEVLKKENPSHIGVA 61
           + N L L+D  + +YRAYYA    P + NSKG  T A+ G VN L  +L +  P+ + V 
Sbjct: 5   ASNPLILVDGSSYLYRAYYA---PPHLTNSKGEATGAVYGVVNMLRSLLSRYRPTQMAVV 61

Query: 62  FDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIHAYRIPILEVAGYEADDVIGTL 121
           FD  GPTFR+E +++YKA R   P+ +R  +  +  II A  IP++ + G EADDVIGT+
Sbjct: 62  FDAKGPTFRNEMYQEYKAHRPPMPDDLRSQIAPLHRIIKALGIPLISIPGVEADDVIGTI 121

Query: 122 ATEAGRQGITTYMMTPDKDYGQLVTDNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPAQVI 181
           A +AG +G +  + T DKD  QLV +++ +    +T    ++G EEV  KF +  P  +I
Sbjct: 122 AIQAGNEGRSVLISTGDKDMAQLVNEHITLI---NTMTDTILGPEEVATKFGV-GPELII 177

Query: 182 DMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTD-----QLKGA--LKTKVE 234
           D+L +MGD +DNIPG PGVGEKTA  ++   G +  LL   D       +GA  +  K+ 
Sbjct: 178 DLLAMMGDKADNIPGLPGVGEKTALAMLTGAGGVAKLLAEPDCVTDLGFRGAKTMAAKIR 237

Query: 235 TNKELITFSKFLATIKIDVPIQLEMDKLVREQADEDSLRQIFEELEFRTLIDRVLKKENS 294
            N E++  S  LATIK DV ++ +  +L   + + D L   + E+EF+  +  VL  ++ 
Sbjct: 238 DNAEMLELSYKLATIKTDVTLEQDWHQLSLSEPNRDELIACYGEMEFKRWLAEVLDNKSP 297

Query: 295 AGGVTMATGSKTATAKSAPSPLPLFPEEGGAIQGDLFANFTGNEAGEAKKSNLETLETLN 354
            G    A  +   T +S  + +                                    + 
Sbjct: 298 LGTKAAAPQANQETTESPAAAV------------------------------------IE 321

Query: 355 CDYQLIDTEKKRAEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSITENQAFYVPVPD 414
             Y  + TE +    + KL  ++++++DTETT  + M AELVG+SF+I   +A Y+P+  
Sbjct: 322 TQYHTLLTESELDAWLDKLSKAELIAVDTETTSLDYMQAELVGLSFAIEAGKAAYLPLGH 381

Query: 415 N---------REEALKIVNEFRPVFENENSLKVGQNIKYDMIVLENYGVQVKGALFDTMI 465
           +         RE  L    + +P+ EN +  KVGQN+KYDM VL N G+Q+KG  FDTM+
Sbjct: 382 DYPGAPSQLPREATLA---KLKPLLENPDIKKVGQNLKYDMSVLANAGIQLKGVAFDTML 438

Query: 466 AHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQKNMRDLDPKDIYRYACEDAD 524
             YV      RH MD LA  YL ++ I  +E+ G KG  Q     +  +    YA EDAD
Sbjct: 439 ESYVFNSVASRHDMDGLALKYLGHKNISFEEIAG-KGAKQLTFNQIALEQAAPYAAEDAD 497

Query: 525 VTLKLKNVLEKEL-KENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQM 583
           +TL+L   L   L KE   E +F ++E+PL+ VL +IER GVL+D+  L Q S     ++
Sbjct: 498 ITLRLHQHLWPRLSKEEGLESVFTELELPLIEVLSDIERRGVLIDSMLLGQQSEELARKI 557

Query: 584 QRIEQEIYELAGETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHP 643
             +EQ  +E+AGE FN++S KQ+ E+ F KL      KKT  G   T+EEVL  L   +P
Sbjct: 558 DELEQHAHEIAGEPFNLSSTKQLQELFFTKLG-YPVIKKTPKGAPSTAEEVLVELALDYP 616

Query: 644 VVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTVTSTGRLSSSNPNLQNIPIR 703
           + + ILEHR L KL  TY D LP +IN RTGRVHTS++Q   +TGRLSSS+PNLQNIPIR
Sbjct: 617 LPKIILEHRSLTKLKSTYTDKLPLMINGRTGRVHTSYHQANAATGRLSSSDPNLQNIPIR 676

Query: 704 DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHDIHAATAAKIY 763
            E G+ IR+AF+  EG    +ADYSQIELRIMAHLS+D+ ++ AF    DIH ATAA+++
Sbjct: 677 TEEGRRIRQAFVAPEGKRILAADYSQIELRIMAHLSQDEGLLRAFAEGKDIHRATAAEVF 736

Query: 764 KIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPSVKAYM 823
            +  + V S+ RR+AK  NFG+IYG+S FGLA ++++ R EA+  ID YF+ YP V  YM
Sbjct: 737 DVAFETVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQSYIDTYFKRYPGVLKYM 796

Query: 824 EKSIQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMAR 883
           E++  +A E+GYV T+F R+ +LP+I  RNA+ R  AER AINAP+QG+AADIIK AM  
Sbjct: 797 EETRAMASEQGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPMQGTAADIIKKAMIA 856

Query: 884 IYQRFQTEGI-QAKMILQVHDELNFSVPVNEKERVEEIVIEEMEHAYRMHVPLKADCGWG 942
           I    +TE   + +MI+QVHDEL F V  ++ + ++E V E M  A  + VPL A+ G G
Sbjct: 857 IQHWIKTETQGEIQMIMQVHDELVFEVDADKADALKEKVCELMAAAASLDVPLLAEAGLG 916

Query: 943 KNWLEAH 949
            NW +AH
Sbjct: 917 DNWDQAH 923