Pairwise Alignments

Query, 949 a.a., DNA polymerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 930 a.a., DNA polymerase I (RefSeq) from Shewanella loihica PV-4

 Score =  667 bits (1722), Expect = 0.0
 Identities = 391/964 (40%), Positives = 568/964 (58%), Gaps = 69/964 (7%)

Query: 3   SDNKLFLLDAYALIYRAYYAFIKNPRI-NSKGFNTSAILGFVNTLEEVLKKENPSHIGVA 61
           ++N L L+D  + +YRAYYA    P + NSKG  T A+ G +N L  +L +  P+ + V 
Sbjct: 19  AENPLILVDGSSYLYRAYYA---PPHLTNSKGEATGAVYGVINMLRSLLNQYKPTQMAVV 75

Query: 62  FDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIHAYRIPILEVAGYEADDVIGTL 121
           FD  G TFR+E + +YKA R   P+ +R  +  +  II A  +P++ + G EADDVIGT+
Sbjct: 76  FDAKGKTFRNEMYAEYKAHRPPMPDDLRTQIEPLHRIIRALGLPLVCIPGVEADDVIGTI 135

Query: 122 ATEAGRQGITTYMMTPDKDYGQLVTDNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPAQVI 181
           A +A ++G    + T DKD  QLV D + +    +T    ++G +EV  KF +  P  +I
Sbjct: 136 ARQASQEGRAVLISTGDKDMAQLVDDKITLI---NTMTNTILGPDEVSEKFGV-GPELII 191

Query: 182 DMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQL-----KGA--LKTKVE 234
           D+L L GD +DNIPG PGVGEKTA  ++   G +E +L + +++     +GA  +  K+ 
Sbjct: 192 DLLALQGDKADNIPGLPGVGEKTALAMLQGVGGVEAILANPEKMPELGFRGAKTMPAKIA 251

Query: 235 TNKELITFSKFLATIKIDVPIQLEMDKLVREQADEDSLRQIFEELEFRTLIDRVLKKENS 294
            + +++  S  LATIK DV ++ +  +L  + AD D L + + E+EF+  +  VL  ++S
Sbjct: 252 EHGDMLKLSYELATIKCDVELEQDWHQLNIQGADRDELIKCYGEMEFKRWLAEVLDNKSS 311

Query: 295 AGGVTMATGSKTATAKSAPSPLPLFPEEGGAIQGDLFANFTGNEAGEAKKSNLETLETLN 354
           A        S    A   P+P                                   + ++
Sbjct: 312 A--------SSQEEADEVPAP-----------------------------------QAID 328

Query: 355 CDYQLIDTEKKRAEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSITENQAFYVPVPD 414
             Y  I T +   E ++ L  + + +LDTETT    M+A++VG+SF+I   +A Y+P+  
Sbjct: 329 TQYDTILTWEALDEWLKALAAAPLFALDTETTSLNYMEAKMVGLSFAIEPGKAAYLPLAH 388

Query: 415 NREEALK------IVNEFRPVFENENSLKVGQNIKYDMIVLENYGVQVKGALFDTMIAHY 468
           +  +A +      ++ + +P+ E+ + LKVGQN+KYDM +L N G+ +KG  FDTM+  Y
Sbjct: 389 DYADAPEQLDSEQVLAKLKPLLEDPSLLKVGQNLKYDMSILANVGIALKGVAFDTMLESY 448

Query: 469 VLQPEL-RHGMDYLAEIYLHYQTIHIDELIGPKGKNQKNMRDLDPKDIYRYACEDADVTL 527
           V      +H MD LA  YL ++ I  +E+ G KG  Q     +  +    YA EDAD+TL
Sbjct: 449 VFNSVASKHNMDDLALKYLGHKNISFEEIAG-KGVKQLTFNQIPLETAAPYAAEDADITL 507

Query: 528 KLKNVLEKEL-KENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRI 586
           +L   L   L K ++   +F DIE+PLV +L  IER GVL+D+  L Q S     ++  +
Sbjct: 508 RLHQHLWPRLQKASELASVFTDIELPLVSILSQIERQGVLIDSMLLGQQSDELARKIDEL 567

Query: 587 EQEIYELAGETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVE 646
           EQ+ YE+AGE FN+ S KQ+  + F+KL      KKT  G   T+EEVL  L   +P+ +
Sbjct: 568 EQKAYEIAGEPFNLGSTKQLQALFFEKLGY-PVLKKTPKGAPSTAEEVLVELALDYPLPK 626

Query: 647 KILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTVTSTGRLSSSNPNLQNIPIRDEN 706
            ILEHR L KL  TY D LP +++ +TGRVHTS++Q + +TGRLSSS PNLQNIPIR E 
Sbjct: 627 IILEHRSLSKLKSTYTDKLPLMVDGKTGRVHTSYHQAIAATGRLSSSEPNLQNIPIRTEE 686

Query: 707 GKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHDIHAATAAKIYKID 766
           G+ IR AF+  EG    +ADYSQIELRIMAHLS+DK ++ AF    DIH ATAA+++ +D
Sbjct: 687 GRRIRHAFVAPEGRKILAADYSQIELRIMAHLSQDKGLLSAFAEGKDIHRATAAEVFDVD 746

Query: 767 LKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPSVKAYMEKS 826
             +V S+ RR+AK  NFG+IYG+S FGLA ++++ R EA++ ID YF+ YP V  YME +
Sbjct: 747 FSEVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRHEAQQYIDIYFKRYPGVLKYMEDT 806

Query: 827 IQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQ 886
              A E+GYV T++ R+ +LP I  RNA+ R  AER AINAP+QG+AADIIK AM  I Q
Sbjct: 807 RAAAAEQGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAINAPMQGTAADIIKKAMINIAQ 866

Query: 887 RFQTEGI-QAKMILQVHDELNFSVPVNEKERVEEIVIEEMEHAYRMHVPLKADCGWGKNW 945
             +TE   +  MI+QVHDEL F V  ++ + ++  V E M  A  + V L A+ G G NW
Sbjct: 867 WIETETQGEITMIMQVHDELVFEVDADKADSLKLKVCELMAQAASLDVELLAEAGIGDNW 926

Query: 946 LEAH 949
            +AH
Sbjct: 927 EQAH 930