Pairwise Alignments

Query, 949 a.a., DNA polymerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 872 a.a., DNA polymerase I (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  451 bits (1161), Expect = e-131
 Identities = 319/953 (33%), Positives = 474/953 (49%), Gaps = 104/953 (10%)

Query: 7   LFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKENPSHIGVAFDPSG 66
           L+L+D  A I+R +YA+    R  S GF T+A+      L  +L++E P++     D  G
Sbjct: 14  LWLMDGSAFIFRGFYAYQSMQR--SDGFPTNALFIVTRILLRLLREERPTNFCFVLDGKG 71

Query: 67  PTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIHAYRIPILEVAGYEADDVIGTLATEAG 126
           PTFRHE F  YK QR  TPE +   +  IK ++ A  +P++   G EADD I +LA    
Sbjct: 72  PTFRHELFPPYKMQRAVTPEPLVQQLDPIKRMVRALGLPLVVSDGCEADDCIASLAARH- 130

Query: 127 RQGITTYMMTPDKDYGQLVTDNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPAQVIDMLGL 186
           R      ++  DKD  Q + DNV ++ P      +++ + +  A+  + +PA+  D   +
Sbjct: 131 RSERPVVIVGTDKDLKQCLHDNVVLWDPAAKEE-KLVTLADFTAETGL-APARWPDFQAV 188

Query: 187 MGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTKVETNKELITFSKFL 246
           +GD+SDNIPG PGVG KTA+K+  +FGS+E++ +   +L   L+ K E + E +   + L
Sbjct: 189 IGDSSDNIPGIPGVGPKTAEKIFKDFGSLEDIRDRVGELPEKLRAKFEPHLETMFLYRQL 248

Query: 247 ATIKIDVPIQLEMDKLVREQADEDSLRQIFEELEFRTLIDRVLKKENSAGGVTMATGSKT 306
            T+  D   ++ +  L     D      +  E E R L  R L      G VT A     
Sbjct: 249 TTLTTDACPEVTLPDLAVRPLDPAEAGAMLREFELRQLT-RELSGMIENGSVTSA----- 302

Query: 307 ATAKSAPSPLPLFPEEGGAIQGDLFANFTGNEAGEAKKSNLETLETLNCDYQLIDTEKKR 366
                        P     +Q  LF    G+E   A   N     T     +L D E   
Sbjct: 303 -------------PRSTSQVQASLF----GDEGRRADPVN-----TCKDPGKLPDCEGVA 340

Query: 367 AEIIQKLLTSKILSL-----DTETTGTEPMDAELVGMSFSITENQAFYVPVPDNREEALK 421
           A ++       I +      D E+  + P+DA    +S      +A  V  PD     +K
Sbjct: 341 AAVVPVFDNGAITAYAVAAGDCESRYSGPVDALARHLS------RAAQVAAPD-----VK 389

Query: 422 IVNEFRPVFENENSLKVGQNIKYDMIVLENYGVQVKGALFDTMIAHYVLQPELR-HGMDY 480
            +    P +   +  +                       FD  +A Y+L PE R +G   
Sbjct: 390 HLLRTDPAWAGIDPAR----------------------WFDLGLAAYLLNPEERDYGWPR 427

Query: 481 LAEIYLHYQTIHIDELIGPKGKNQKNMRDLDPKDIYRYACEDADVTLKLKNVLEKELKEN 540
           LA  +        DEL    G                       + L++   L   L   
Sbjct: 428 LAARWG-------DELERSSGN-------------------PGLLALEMAGALSGRLAGA 461

Query: 541 DAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQEIYELAGETFNI 600
              RL   +EMPL+PVL ++E  G+ +D +A          ++ R+ +++Y+ AG  FNI
Sbjct: 462 QLSRLMRTLEMPLIPVLADMEAAGIAVDLDAFAAFLREVQGELDRLTRDVYKAAGGEFNI 521

Query: 601 ASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHRGLKKLLGT 660
            S +Q+ E+LF  L +     KTK GQ  T+++VLE L  +HPVV+ ILE R L+KL  T
Sbjct: 522 RSSQQLAELLFGTLGL-PTGGKTKGGQTSTAQDVLEKLSGRHPVVDAILEFRKLEKLRST 580

Query: 661 YIDALPQLINPRTGRVHTSFNQTVTSTGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGC 720
           Y++ LP+L++   GR+HT+FNQ  T+TGRLSSSNPNLQNIP+R + G+ +R  F    G 
Sbjct: 581 YLEPLPRLVDG-AGRIHTTFNQLATATGRLSSSNPNLQNIPVRGDLGRRMRTCFTAAPGL 639

Query: 721 LFFSADYSQIELRIMAHLSEDKNMIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKT 780
              SADYSQ+ELR++AH+S+D  ++ AF    DIH+ TA+ +Y +    V +D RR AKT
Sbjct: 640 RLVSADYSQVELRVLAHMSQDPTLLAAFREGADIHSRTASLLYDVAQDQVSTDQRRNAKT 699

Query: 781 ANFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIF 840
            NFG+IYG+    LA+ + +   EAK  I+ YF     ++ + +++   A+E GYV T+ 
Sbjct: 700 INFGLIYGMGPQKLAQELRIPLTEAKAFIERYFSKLQKLREFYDEAETTARELGYVTTMA 759

Query: 841 HRKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQ 900
            R+R LP+I+S N  ++  A R AIN  IQGSAADIIK+AM   +   +   + A++ILQ
Sbjct: 760 GRRRLLPEIHSENTQLKSQARRQAINTLIQGSAADIIKLAMLAAHADPELRALNARLILQ 819

Query: 901 VHDELNFSVPVNEK----ERVEEIVIEEMEHAYRMHVPLKADCGWGKNWLEAH 949
           VHDEL   VP +      ER+  I+         + VPL  D G G+NW  AH
Sbjct: 820 VHDELLLEVPADNAPAAGERLAAIMSGVRPGGVALDVPLAVDWGQGENWGVAH 872