Pairwise Alignments

Query, 949 a.a., DNA polymerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 921 a.a., DNA polymerase I (EC 2.7.7.7) from Sphingomonas koreensis DSMZ 15582

 Score =  553 bits (1425), Expect = e-161
 Identities = 353/973 (36%), Positives = 537/973 (55%), Gaps = 85/973 (8%)

Query: 7   LFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTL----EEVLKKENPSHIGVAF 62
           L+L+D    I+RAY+     P  N  G    A+ G+   L    +E+ K + P+H+ V  
Sbjct: 4   LYLVDGSGYIFRAYHRL--PPLTNKHGEPVGAVYGYTTMLWKLADELHKADGPTHMAVIL 61

Query: 63  DPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIHAYRIPILEVAGYEADDVIGTLA 122
           D S  TFR+E ++QYKA R   PE +    P+I+D   A+ +P +E AG+EADD+I +  
Sbjct: 62  DKSEHTFRNEMYDQYKAHRPPAPEDLVPQFPMIRDATRAFSLPCIEEAGWEADDLIASYT 121

Query: 123 TEAGRQGITTYMMTPDKDYGQLVTD-NVFMYRPKHTGGFEVMGIEEVKAKFDIQSPAQVI 181
             A  QG    +++ DKD  QL+TD +V M     T     +G ++ + KF +  P ++ 
Sbjct: 122 KAALAQGWQVTIVSSDKDLMQLMTDPSVDML---DTMNNRRLGPKDTEEKFGVL-PEKLG 177

Query: 182 DMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGA-LKTKVETNKELI 240
           ++L LMGD+ DN+PG  G+G KTA KLI EFG+++ +LE    +K + ++  +    ++ 
Sbjct: 178 EVLALMGDSVDNVPGVKGIGPKTAAKLIQEFGTVDAVLEAAPSMKPSKMRDNLIEYADMA 237

Query: 241 TFSKFLATIKIDVPIQLEMDKLVREQADEDSLRQIFEELEFRTLIDRVLKKENSAGGVTM 300
             S+ L  +  DVP+   +D+L  +   +  LR   E   F+TL+ R+       GG ++
Sbjct: 238 RLSRKLVELASDVPLPDPLDELELKGIPDAPLRAFLEHHGFKTLLSRL------GGGASV 291

Query: 301 ATGSKTATAKSAPSPLPLFPEEGGAIQGDLFANFTGNEAGEAKKSNLETLETLNCDYQLI 360
           A       A   P P+P  P                                  CD+   
Sbjct: 292 ADAP---VASPEPVPMPDDPP---------------------------------CDHDGY 315

Query: 361 DTEKKRAEIIQKLLTSKI---LSLDTETTGTEPMDAELVGMSFSITENQAFYVPVPDNRE 417
           +T    A + + +L +K    +++DTETTG +   AELVG+S ++  N+A Y+PV     
Sbjct: 316 ETVVDEAALERWILAAKHQGWVAIDTETTGVDATRAELVGVSMALEPNRACYIPVGHGGT 375

Query: 418 EALK----------IVNEFRPVFENENSLKVGQNIKYDMIVLENYGVQVKGALFDTMIAH 467
           +             ++ + +P+ E+ + LK+G NIKYD+IVL   G+ V     DT++  
Sbjct: 376 DMFAEKPVQLDRNLVIAKLKPLLEDPSVLKIGHNIKYDLIVLSRAGIDV-APYDDTIVMS 434

Query: 468 YVLQPELR-HGMDYLAEIYLHYQTIHIDELIGPKGKNQKNMRDLDPKDIYRYACEDADVT 526
           + L   L  HGMD LA  +L +  I   +++G  GK Q   +++D K   RYA EDADVT
Sbjct: 435 FDLDAGLHGHGMDELAATHLSHTCIAYKDVVG-SGKKQLGFQEVDLKAATRYAAEDADVT 493

Query: 527 LKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRI 586
           L+L   L+  L    + R++  ++ PL  V+ ++E  GV +D   L + S  F+ Q+  +
Sbjct: 494 LRLWRRLKPRLPFEGSTRVYEMVDRPLARVIADMELAGVKVDAGVLAKLSDDFSRQIAAL 553

Query: 587 EQEIYELAGETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHK----- 641
           E+EI+ +AG  F I SPKQ+G+VLFDK+ I +  +K K+G Y T    LE +        
Sbjct: 554 EEEIHGIAGFKFTIGSPKQLGDVLFDKMGI-KGGRKGKSGVYSTDVNELERIAADKDSPG 612

Query: 642 HPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTVTSTGRLSSSNPNLQNIP 701
             +V K+L+ R L KL  TY DAL   INP TGRVHTS++ T   TGRLSS++PNLQNIP
Sbjct: 613 REMVLKVLDWRQLTKLKSTYTDALQAQINPATGRVHTSYSLTGAQTGRLSSTDPNLQNIP 672

Query: 702 IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHDIHAATAAK 761
           +R E G++IR AF+ + G +  SADYSQIELR+ AH+++   + +AF    DIH  TA +
Sbjct: 673 VRTEVGRQIRDAFVAEPGNVILSADYSQIELRLAAHIADVPQLREAFERGDDIHNMTATE 732

Query: 762 IYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPSVKA 821
           ++     +V+ D R +AKT NF I+YGIS +GLA R++V   EA+ +ID YFE +P +  
Sbjct: 733 LF----GEVNRDTRGRAKTINFAILYGISRWGLAGRLDVTPDEAQAMIDRYFERFPGISR 788

Query: 822 YMEKSIQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAM 881
           Y+  ++  A+ +GY +T+F RK   P + S     R  +ER AINAPIQG++ADIIK AM
Sbjct: 789 YIADTLNDAKARGYTQTLFGRKTHFPRLKSATQHERAGSERAAINAPIQGTSADIIKRAM 848

Query: 882 ARIYQRFQTEGIQ-AKMILQVHDELNFSVPVNEKERVEEIVIEEMEH----AYRMHVPLK 936
           AR+    +  G++  +M++QVHDEL F +P  + E    ++   ME     A  + VPL 
Sbjct: 849 ARMGPALRDAGLENVRMLMQVHDELVFELPAGDVEAATPVIRGVMESAAEPAVTLSVPLG 908

Query: 937 ADCGWGKNWLEAH 949
            + G G +W  AH
Sbjct: 909 VEIGTGPSWGAAH 921