Pairwise Alignments

Query, 949 a.a., DNA polymerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 932 a.a., DNA polymerase I (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  577 bits (1488), Expect = e-169
 Identities = 360/971 (37%), Positives = 539/971 (55%), Gaps = 75/971 (7%)

Query: 7   LFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKE---NPSHIGVAFD 63
           L L+D  A I+RAY+A     R  S G    A+ GF N L+  ++     + +H+ V FD
Sbjct: 9   LHLIDGSAFIFRAYHALPPLTR-KSDGLPVGAVSGFCNMLQRYVEGNAGGDVTHVAVIFD 67

Query: 64  PSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIHAYRIPILEVAGYEADDVIGTLAT 123
               TFR++ ++QYKA RE  PE +R  +P+ +    A+ I   E+ G+EADD+I TLA 
Sbjct: 68  KGSHTFRNDLYDQYKANREAMPEDLRPQIPLTRTATEAFNIACKEMEGFEADDIIATLAC 127

Query: 124 EAGRQGITTYMMTPDKDYGQLVTDNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPAQVIDM 183
           +A   G    +++ DKD  QLV   V M         +V G+ E   KF +  P +V+D+
Sbjct: 128 QAREAGGRCTIISSDKDLMQLVGGGVEMLDAMKNKTIDVDGVFE---KFGV-GPDRVVDV 183

Query: 184 LGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALK--TKVETNKELIT 241
             L GD+ DN+PG PG+G KTA  LI E+GS+E LL+   ++K   +  T +E ++  I 
Sbjct: 184 QALAGDSVDNVPGAPGIGIKTAALLINEYGSLEELLDRAGEIKQPKRRQTLIE-HRAQIE 242

Query: 242 FSKFLATIKIDVPIQLEMDKLVREQADEDSLRQIFEELEFRTLIDRVLKKENSAGGVTMA 301
            SK L  +  D+ +   ++ L     + ++L     E+EFRTL  R+             
Sbjct: 243 LSKRLVQLDCDMELDFTIEDLEVRDPEPETLLGFLAEMEFRTLTKRISGALGVEAPAVPE 302

Query: 302 TGSKTATAKSAPSPLPLFPEEGGAIQGDLFANFTGNEAGEAKKSNLETLETLNCDYQLID 361
             + TA+ ++   P PL   E   I+                  + ETL++         
Sbjct: 303 PAATTASPEAEEHP-PLSASEHVTIR------------------DAETLQSW-------- 335

Query: 362 TEKKRAEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSITENQAFYVP---------- 411
                   I  +    ++++DTETTG   M A+LVG+S  +   +A Y+P          
Sbjct: 336 --------IDAIHARGVVAVDTETTGLNEMRADLVGVSLCVDPGRAAYLPLAHKDGGGAD 387

Query: 412 --------VPDNREEALKIVNEFRPVFENENSLKVGQNIKYDMIVLENYGVQVKGALFDT 463
                   + + + +    +   +PV E+   LK+GQN+KYD  +L   G+ V   + DT
Sbjct: 388 DLFGGEAKLAEGQLDFETALGMLKPVLEDPAVLKIGQNMKYDAKILARNGITV-APIDDT 446

Query: 464 MIAHYVLQPELR-HGMDYLAEIYLHYQTIHIDELIGPKGKNQKNMRDLDPKDIYRYACED 522
           M+  Y L   L  HGMD L+E YL +  I I  L+G  GK+      +  ++  +YA ED
Sbjct: 447 MLLSYALHAGLHGHGMDALSERYLDHTPIPIKTLLG-TGKSAITFDFVPIEEATKYAAED 505

Query: 523 ADVTLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQ 582
           A++TL+L   L+  L      R++  +E P+VPVL  +E  G+ +D + L + S  F  +
Sbjct: 506 AEITLRLWQRLKPRLHLAQVTRVYEWMERPMVPVLAEMEMRGIKVDRDTLSRMSNAFAQK 565

Query: 583 MQRIEQEIYELAGETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKH 642
           M  +E EI+ELAGE+FN+ SP Q+GE+LF+K+   E  K  K+G+Y T  +VLE L  +H
Sbjct: 566 MAGLEAEIHELAGESFNVGSPAQLGEILFEKMG-FEGGKTGKSGKYSTPADVLEDLATEH 624

Query: 643 PVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTVTSTGRLSSSNPNLQNIPI 702
            +  ++L+ R L KL  TY DAL   INP TGRVHTS++    +TGRL+S++PNLQNIP+
Sbjct: 625 DLPRRVLDWRQLSKLKSTYTDALQDHINPETGRVHTSYSIAGANTGRLASTDPNLQNIPV 684

Query: 703 RDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHDIHAATAAKI 762
           R E G+ IR+AF+ + G +  S DYSQIELRI+AH++    +  AF    DIHA TA+++
Sbjct: 685 RSEEGRRIREAFVAEPGHVLVSLDYSQIELRILAHIAGIDALKTAFRDGLDIHAMTASEM 744

Query: 763 YKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPSVKAY 822
           + + L ++  ++RR+AK  NFG+IYGIS FGLA  + + R EA+  ID YFE +P ++AY
Sbjct: 745 FDVPLDEMTPEVRRQAKAINFGVIYGISGFGLARNLRIPRAEAQAFIDTYFERFPGIRAY 804

Query: 823 MEKSIQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMA 882
           M+ ++  A+E  YV+T+F RK   P+I ++     G+A+R AINAPIQG+AADII+ AM 
Sbjct: 805 MDDTVAFAKEHKYVQTLFGRKIHTPEIGAKGPQA-GFAKRAAINAPIQGTAADIIRRAMV 863

Query: 883 RIYQRFQTEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEEMEHA----YRMHVPLKAD 938
           R+        + A+M+LQVHDEL F V  +  +RV   V + ME A      + VPL  D
Sbjct: 864 RMPAAI--ADLPARMLLQVHDELIFEVEEDAVDRVIPAVRQVMEGAAAPVVHLDVPLTVD 921

Query: 939 CGWGKNWLEAH 949
            G G++W EAH
Sbjct: 922 AGQGRSWAEAH 932