Pairwise Alignments

Query, 257 a.a., putative Fe-S oxidoreductase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 365 a.a., Radical SAM domain protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 82.4 bits (202), Expect = 1e-20
 Identities = 69/236 (29%), Positives = 112/236 (47%), Gaps = 33/236 (13%)

Query: 9   IFGPVHSRRLGVSLGINLLPEDGKVCSFDCIYCECGFNADHRPKKHLPTREEVRIALEEK 68
           +FGPV S RLG SLG++LL   G+VCS DC+YCE G    H  ++       V +    +
Sbjct: 6   VFGPVVSGRLGRSLGLDLL--GGRVCSMDCLYCEVGATDVHTCERAPYVPASVLLDELAR 63

Query: 69  LKDMQ--KNGPAPDV--------------LTFAGNGEPTAHPHFPEIIEDTLALRDHYFP 112
            +D +  K+G  PD               +T  G+GEP  +     II      RD   P
Sbjct: 64  WRDAEAAKHGATPDCRTPSASPASVRLDHVTLGGSGEPCLNSDLARII---AGCRD-ILP 119

Query: 113 NAKVSVLSNSTFIDRPAVFDALNKIDNNILKLDTVNEEYIHLLDRPNGKYSVRKIIEKM- 171
              V+VL+NST + R  V   L   D  +  LD++ E     L+RP+   + R + + + 
Sbjct: 120 GVPVAVLTNSTLLHRDDVRADLAGADVVLPSLDSLVEAEFRALNRPSKGVTARGVADGLL 179

Query: 172 ---KEFKGNCIVQTMFLKGSYLGKDMNNTSDEFVLPWLEAVKEIAPSQVMIYTIDR 224
              + F G   ++ +  +G      +N+T++   L   + V+++AP +V + T+ R
Sbjct: 180 GFARGFGGRIYLEVLLARG------VNDTAENLAL-LRDYVRQLAPHRVDVTTLSR 228