Pairwise Alignments

Query, 862 a.a., DNA mismatch repair protein mutS (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 916 a.a., DNA mismatch repair protein MutS from Sinorhizobium meliloti 1021

 Score =  506 bits (1304), Expect = e-147
 Identities = 321/890 (36%), Positives = 498/890 (55%), Gaps = 43/890 (4%)

Query: 1   MMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKTIEMAGFP 60
           MM+QF+++KA +PD+++ +R GDFYE +  DA+ AS  LGITLTKR    G+ I M G P
Sbjct: 32  MMEQFIEIKANNPDSLLFYRMGDFYELFFQDAVEASRALGITLTKRGQHMGQEIPMCGVP 91

Query: 61  HHALDTYLPKLIRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVSINDNVLNY 115
            HA D YL KLI +G RVA+C+Q+EDP   KK     +V+R +  LVTPG    D +L+ 
Sbjct: 92  VHAADDYLQKLIASGYRVAVCEQVEDPAEAKKRGSKSVVRRDVVRLVTPGTITEDKLLSP 151

Query: 116 KENNFLAAV----HFGKASCGVAFLDISTGEFLTAEGPFDYVDKLLNNFGPKEILFERGK 171
            E+N+L A+       + +  +A++DISTG F  AE     +   +    P+E++     
Sbjct: 152 SESNYLMALARIRSGSEPAYALAWIDISTGIFRLAETAESRLLADILRIEPRELILP--D 209

Query: 172 RLMFEGNFGSKF-----FTFELDDWVFTESTAREKLLKHFETKNLKGFGVEHLKNGIIAS 226
            +  + +    F             +F  +TA  ++ +++    L GFG    +  + A+
Sbjct: 210 TVFHDPDLRPVFDVLGRVAVPQPAVLFDSATAEGRISRYYGVGTLDGFG-SFSRAELAAA 268

Query: 227 GAILQYLTMTQHTQIGHITSLARIEEDKYVRLDKFTVRSLELIGSMNDG-GSSLLNVIDR 285
            A + Y+  TQ  +   +    R      + +D  T  +LEL  +++     SLL  +DR
Sbjct: 269 SAAVSYVEKTQLQERPALGIPERESAASTLFIDPATRANLELAKTLSGSRDGSLLKSLDR 328

Query: 286 TISPMGARLLKRWMVFPLKDEKPINDRLNVVEYFFRQPDFKELIEEQLHLIGDLERIISK 345
           T++  GARLL   ++ PL D + IN RL+ +E    QP F   + + L    D+ R +S+
Sbjct: 329 TMTSGGARLLAERLMSPLTDPERINQRLDSIEVLADQPRFTTDVRDALRRAPDMPRALSR 388

Query: 346 VAVGRVSPREVVQLKVALQAIEPIKQACLEAD-NASLNRIGEQLN-LCISIRDRIAKEIN 403
           +A+GR  PR++  ++  ++A   I      A+ +A L    + +  L   +  R+   + 
Sbjct: 389 LALGRGGPRDLGAIQAGMRAAAAISALLSGAELSAELTEARDAIAALPGELLARLDATLA 448

Query: 404 NDPPLLINKGGVIKDGVNEELDELRRISYSGKDYLLQIQQRESEQTGIPSLKVAYNNVFG 463
            + PLL   GG +++G + ELDE+R +    +  +  +Q +  E+TGI SLK+ +NNV G
Sbjct: 449 EELPLLKRDGGFVREGASAELDEMRALRDQSRRVIAGLQLQYCEETGIKSLKIKHNNVLG 508

Query: 464 YYIEVRN------IHKDKVPQEWIRKQTLVNAERYITQELKVYEEKILGAEDKILVLETQ 517
           Y+IEV           D     +I +QT+ NA R+ T EL   E KI  A D+ L +E +
Sbjct: 509 YFIEVTAGNAGSMTDTDAGRARFIHRQTMANAMRFTTTELAELETKIANAADRALAIELE 568

Query: 518 LYTDLVQALTEFIPQIQINANQIARLDCLLSFANVARENNYIRPVIEDNDVLDIRQGRHP 577
            +  +V+ +      I+  A  +A +D     A +A E NY RP ++ + +  I  GRHP
Sbjct: 569 TFEAMVREVVAEAEAIKAAALALATIDVSAGLAVLAEEQNYTRPTVDRSRMFAIDGGRHP 628

Query: 578 VIEKQL--PIGEKYIANDVMLDSASQQ----IIIITGPNMAGKSALLRQTALITLLAQIG 631
           V+E+ L       ++AN   L   + +    I ++TGPNM GKS  LRQ ALI ++AQ G
Sbjct: 629 VVEQALRRQAANPFVANGCDLSPPNGEQGGAIWLLTGPNMGGKSTFLRQNALIAIMAQTG 688

Query: 632 SFVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNVSSRSLVLFDELGR 691
           SFVPA +AHIG+VD++F+RVGASD+++ G STFMVEM E A ILN  + RSLV+ DE+GR
Sbjct: 689 SFVPAAAAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVILDEIGR 748

Query: 692 GTSTYDGISIAWAIVEYIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNK 751
           GT+T+DG+SIAWA VE++HE    + R LFATH+HEL  + +   R+ N  + VKE D  
Sbjct: 749 GTATFDGLSIAWAAVEHLHE--VNRCRGLFATHFHELTVLSEKLVRLSNATMRVKEWDGD 806

Query: 752 VIFLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANTILKQLESDNRQ----QGISGKPLT 807
           VIFL ++  G ++ S+GI VA++AG+P S+V RA  +L +LE  +R+    Q I   PL 
Sbjct: 807 VIFLHEVGPGAADRSYGIQVARLAGLPASVVARARDVLAKLEDADRKNPASQLIDDLPLF 866

Query: 808 EVSENRSGMQLSFFQLDDPILCQIRDEILNLDVNNLTPIEALNKLNDIKK 857
           +V+  R     +      P   ++ + +  L+ +++TP EAL+ L  +KK
Sbjct: 867 QVAVRREEAARA---SSGP--SKVEEALKALNPDDMTPREALDALYALKK 911