Pairwise Alignments

Query, 862 a.a., DNA mismatch repair protein mutS (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 876 a.a., DNA mismatch repair protein MutS from Marinobacter adhaerens HP15

 Score =  592 bits (1527), Expect = e-173
 Identities = 332/876 (37%), Positives = 523/876 (59%), Gaps = 30/876 (3%)

Query: 1   MMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKTIEMAGFP 60
           MM+Q+L +K +HP+ ++ +R GDFYE +  DA  A+E++ ITLT R    G  I MAG P
Sbjct: 14  MMQQYLKIKGQHPNELVFYRMGDFYELFYEDAKKAAELMDITLTARGQSGGNPIPMAGIP 73

Query: 61  HHALDTYLPKLIRAGKRVAICDQLEDPKLTKKLVKRGITELVTPGVSINDNVLNYKENNF 120
           +H+ + Y+ +L+RAG+ +AIC+Q+ DP  +K  V R +  +VTPG   +D  L  + +N 
Sbjct: 74  YHSSEGYIARLVRAGQSIAICEQIGDPATSKGPVDRQVVRIVTPGTLSDDAYLEDRRDNL 133

Query: 121 LAAVHFGKASCGVAFLDISTGEFLTAE-GPFDYVDKLLNNFGPKEILFERGKRL--MFEG 177
           L A++  +   G A LDIS+G F  +E    + +   L    P EIL         + EG
Sbjct: 134 LVAIYNHREQFGFASLDISSGRFAVSELENLEALQGELQRLRPAEILISEDFPYEDVLEG 193

Query: 178 NFGSKFFTFELDDWVFTESTAREKLLKHFETKNLKGFGVEHLKNGIIASGAILQYLTMTQ 237
             G +        W+F   TAR  +    + ++L GFG E L   + A+G +LQY   TQ
Sbjct: 194 FTGIR----RQGPWLFESDTARRVITHQLQVRDLTGFGCEELNLAVCAAGCLLQYAKETQ 249

Query: 238 HTQIGHITSLARIEEDKYVRLDKFTVRSLELIGSMNDGGS-SLLNVIDRTISPMGARLLK 296
            T + HI  L R   D+ V LD  + R+LE+  ++  G   +L  V+DRT + MG R L+
Sbjct: 250 RTALPHIRKLTRERRDEAVILDAASRRNLEIDTNLMGGHQYTLAWVMDRTATSMGGRELR 309

Query: 297 RWMVFPLKDEKPINDRLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKVAVGRVSPREV 356
           RW+  PL+D + +  R   V        + E + + L  +GD+ER++++VA+    PR++
Sbjct: 310 RWLNRPLRDVEIVRQRQQAVSALLDGFHY-EPVHDLLKAVGDIERVLARVALRSARPRDL 368

Query: 357 VQLKVALQAIEPIKQACLEADNASLNRIGEQLNLCISIRDRIAKEINNDPPLLINKGGVI 416
            +L+ A QA+  +++     ++  + R+   +     + D + + I ++PP++I +GGVI
Sbjct: 369 ARLRDAFQALPDLQETLKPVNSHHVVRLATIIGEYPELADLLERAIIDNPPVVIREGGVI 428

Query: 417 KDGVNEELDELRRISYSGKDYLLQIQQRESEQTGIPSLKVAYNNVFGYYIEVRNIHKDKV 476
           ++G +EELDELR IS +   YLL ++ RE ++TGI +LKV YN V GYYIE+     D+ 
Sbjct: 429 REGFDEELDELRNISENAGQYLLDVETRERDRTGISTLKVGYNRVHGYYIEISRAQSDQA 488

Query: 477 PQEWIRKQTLVNAERYITQELKVYEEKILGAEDKILVLETQLYTDLVQALTEFIPQIQIN 536
           P ++IR+QTL NAER+IT ELK +E+K L A+ + L  E  LY D+++ +   +  +Q  
Sbjct: 489 PVDYIRRQTLKNAERFITPELKEFEDKALSAKSRALAREKGLYDDVLETVAGQLAPLQDA 548

Query: 537 ANQIARLDCLLSFANVARENNYIRPVIEDNDVLDIRQGRHPVIEKQLPIGEKYIANDVML 596
           A  +A LD L +FA  A    +  P   ++   DI +GRHPV+E+ L   E ++ ND+++
Sbjct: 549 AQALAELDVLSNFAERATSLRFSAPEFSESPGFDIEEGRHPVVEQLL--DEPFVPNDLLM 606

Query: 597 DSASQQIIIITGPNMAGKSALLRQTALITLLAQIGSFVPAESAHIGLVDKIFTRVGASDN 656
           D+  +++++ITGPNM GKS  +RQ ALI LLA  GSFVPA  A IG VD+IFTR+G+SD+
Sbjct: 607 DT-QRRMLVITGPNMGGKSTYMRQAALIALLAYTGSFVPANRAVIGPVDRIFTRMGSSDD 665

Query: 657 ISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPKAK 716
           I+ G STFMVEM E A+IL+N +  SLVL DE+GRGTST+DG+S+AWA  E++    + +
Sbjct: 666 IAGGRSTFMVEMTETANILHNATEHSLVLMDEVGRGTSTFDGLSLAWATAEHLAR--EIR 723

Query: 717 ARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVIFLRKLERGGSEHSFGIHVAKMAG 776
             TLFATHY EL ++    +   N +++  E D+ ++FL  +  G +  S+G+ VAK+AG
Sbjct: 724 CYTLFATHYFELTQLADELQHAVNVHLTATEHDDSIVFLHNVHDGPASQSYGLQVAKLAG 783

Query: 777 MPKSIVKRANTILKQLE---------SDNRQQGIS---GKPLTEVSENRSGMQLSFFQLD 824
           +P+ +++ A T L  LE         +   +QG +    KP T+V  N S  Q   F   
Sbjct: 784 VPQDVIRNAKTQLSHLEGSASPAAPAASAAEQGNNASLAKPATKV--NESVYQGDMFASL 841

Query: 825 DPILCQIRDEILNLDVNNLTPIEALNKLNDIKKIVR 860
           +P    + + + ++D++ LTP +A+N+L ++K +++
Sbjct: 842 EP--SAVEEALKDMDLDGLTPRDAMNQLYELKALMK 875