Pairwise Alignments

Query, 862 a.a., DNA mismatch repair protein mutS (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 903 a.a., DNA mismatch repair protein MutS from Caulobacter crescentus NA1000

 Score =  462 bits (1190), Expect = e-134
 Identities = 305/894 (34%), Positives = 473/894 (52%), Gaps = 48/894 (5%)

Query: 1   MMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKTIEMAGFP 60
           +M QF ++KA+ PDA++ FR GDFYE +  DA  A+  LGI+ T R    G+ I MAG P
Sbjct: 21  VMAQFFEMKARQPDALIFFRMGDFYELFFDDAYKAAAALGISQTFRGTHNGQPIPMAGVP 80

Query: 61  HHALDTYLPKLIRAGKRVAICDQLEDPKLTKK-----LVKRGITELVTPGVSINDNVLNY 115
            HA + YL KLIR G +VA+C+Q+EDP   KK     +V+R I  +VTPG    D +L+ 
Sbjct: 81  QHAAEAYLSKLIRLGFKVAVCEQMEDPAEAKKRGSKAVVRRDIVRVVTPGTLTEDGLLDA 140

Query: 116 KENNFLAAVHFGKASCGVAFLDISTGEFLTAEGPFDYVDKLLNNFGPKEILFERGKRLMF 175
           +  N LAAV        VA +++STGE        + V  +L    P E L     RL+ 
Sbjct: 141 RGANRLAAVALRAGQAAVASVELSTGEVEVLAVAKEGVAPILAALAPSETLV--ADRLLS 198

Query: 176 EGNFGSKFFTFELDDWVFTESTAREKLLKHFETKNLKGFGVEHLKN-------GIIASGA 228
           + +      T  +   +     +     +  ET+  + +GVE L          I A G 
Sbjct: 199 DDSLSQ---TLRICGGLVQPMPSALSEPQASETRVKRLYGVETLDGFGGLSPAEIGALGL 255

Query: 229 ILQYLTMTQHTQIGHITSLARIEEDKYVRLDKFTVRSLELIGSMN-DGGSSLLNVIDRTI 287
           I  +L MTQ  ++  + +  R  +   + +D  T  SLE+  + + D   SLL  IDRT+
Sbjct: 256 IAAHLEMTQAGRLPALRAPRRAADADVMAIDPATRSSLEIDRTQSGDRNGSLLAAIDRTV 315

Query: 288 SPMGARLLKRWMVFPLKDEKPINDRLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKVA 347
           +  GAR+L   +  PL D   I+ RL+ VE+F      ++ + E L   GD+ R +S++A
Sbjct: 316 TAGGARMLASRLARPLLDVAAIDQRLDAVEWFVEHRQLRQRLREVLKGAGDMARALSRLA 375

Query: 348 VGRVSPREVVQLKVALQ-----------AIEPIKQACLEADNASLNRIGEQLNLCIS-IR 395
           +GR  PR++  ++  L+           A +P+     E ++A    +   L+  +S   
Sbjct: 376 LGRGGPRDLGCIRDTLKVGERLAGMAGGAPDPLSPPPFELEHA-FKALTPALHEGLSQFL 434

Query: 396 DRIAKEINNDPPLLINKGGVIKDGVNEELDELRRISYSGKDYLLQIQQRESEQTGIPSLK 455
             +   +  D P L   GG +  GV  ELD+ R +    +  +  ++ + + ++G+P LK
Sbjct: 435 TTLEHGLGPDLPALARDGGFVAAGVRPELDQARGLRDDSRKVIAALESQLALESGVP-LK 493

Query: 456 VAYNNVFGYYIEVRNIHKDKVPQE-----WIRKQTLVNAERYITQELKVYEEKILGAEDK 510
           + +N V GY++E      D + Q      +I +QTL N  R+ T EL   + +I  A ++
Sbjct: 494 IRHNGVLGYFVEATAGKADPLFQPPLNATFIHRQTLANQVRFTTVELADLDARIAQAAER 553

Query: 511 ILVLETQLYTDLVQALTEFIPQIQINANQIARLDCLLSFANVARENNYIRPVIEDNDVLD 570
            L +E   + D  +        IQI +  +AR+D   S A  A +   +RPV++ +   D
Sbjct: 554 ALAMEVAAFEDWREQARLLADAIQIASEALARIDVASSLAEWAEDAGAVRPVVDASYAFD 613

Query: 571 IRQGRHPVIEKQLP-IGEKYIANDVMLDSASQ---QIIIITGPNMAGKSALLRQTALITL 626
            +  RHPV+E  +   GE Y  ND  LD++ +   ++ I+TGPNMAGKS  LRQ AL+ +
Sbjct: 614 AKAARHPVVEAAVKRAGEPYTPNDCRLDASGETAARLSIVTGPNMAGKSTFLRQNALLAI 673

Query: 627 LAQIGSFVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNVSSRSLVLF 686
           LAQ G +VPA S  +G+VD++F+RVGA D+++ G STFM+EM E A IL     RSLV+ 
Sbjct: 674 LAQSGCYVPAASFRLGVVDRLFSRVGAGDDLARGRSTFMMEMVETASILTQAGPRSLVIL 733

Query: 687 DELGRGTSTYDGISIAWAIVEYIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVK 746
           DE+GRGT+TYDG++IAWA  E +H+    + R LFATHYHEL  +E     + N ++  K
Sbjct: 734 DEIGRGTATYDGLAIAWACAEALHD--TNRCRALFATHYHELATLETRMAFVSNLSLRAK 791

Query: 747 EVDNKVIFLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANTILKQLES-DNRQQGISGKP 805
           E +  ++FL +   G ++ S+G+ VAK+AG+P  +V RA  +L +LES D     +   P
Sbjct: 792 EWNGDLVFLHEAAPGPADRSYGVQVAKLAGVPAPVVVRAREVLDRLESKDQSPAKLDDLP 851

Query: 806 LTEVSENRSGMQLSFFQLDDPILCQIRDEILNLDVNNLTPIEALNKLNDIKKIV 859
           L  VS+  +            +   + D    LDV+ ++P EAL  L  +K ++
Sbjct: 852 LFAVSQAVAVTSAPAKAAPSAVETSLAD----LDVDGMSPREALEALYRLKGLL 901