Pairwise Alignments

Query, 1061 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1021 a.a., SusC/RagA family protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  527 bits (1357), Expect = e-153
 Identities = 348/1063 (32%), Positives = 547/1063 (51%), Gaps = 83/1063 (7%)

Query: 28   LGYISTVSAQS------HKISGVVVDEG-KSPIIGATIQVKGANNGTITDIDGNFSLEV- 79
            LG   TV AQ        K+ G V+DE  K P+IG ++Q+KG  +   T+  G FS    
Sbjct: 11   LGLSVTVKAQQTIPLVQSKLVGTVLDEKTKDPLIGVSVQIKGTTHVAQTNAQGIFSFITG 70

Query: 80   -KNPKAQLQISYIGFTTITVPVQLKGKMTITMQEASRNLDEVVVIGYGTVRKSDLSGSVS 138
             K P   L +SYIG+    + V     + I ++E +  L+E+VV+GYGT ++ DL+G+++
Sbjct: 71   QKFPYT-LVVSYIGYQKQELIVD-GSPVNILLKEENGQLNEIVVVGYGTQKRKDLTGAIA 128

Query: 139  AVSMKNEAEIMPITSADQFLQGRIAGVSIAANSGAPGAGMNIQIRGVSTLSGNTDPLYVV 198
            +V + +E + +P++S ++ LQG ++G+ +   SG PG G+++QIRG ++++  +DPLYV+
Sbjct: 129  SVKL-DELKSLPVSSPERLLQGTVSGIQVTQTSGQPGGGVSVQIRGSNSITAGSDPLYVI 187

Query: 199  DGFPIEAATASVNGGTSELSQQPAMNPLASINPNDIESIQVLKDASATAIYGSRATNGVI 258
            DGFPI     + + G +  ++   +NP++ ++  DIESI VLKDASATAIYGSR  NGV+
Sbjct: 188  DGFPINNDNTAADAGVTNGAK---INPMSFLSAEDIESIDVLKDASATAIYGSRGANGVV 244

Query: 259  LITTKQGKEGKVNVNYNARVDISNISKRYNLLNAHDYALFENELDRTSNGYDMQGNVIPS 318
            +ITTK GK    ++NY+      ++ +   LLN   +     +  + S     +  VIPS
Sbjct: 245  IITTKTGKPSNPSINYDGYYGSQSVIRTLPLLNGAQWWALRKDAAKNSG----KNLVIPS 300

Query: 319  TKVPRHTDDALERYKIYSTDWQDLMYQTAVSQDHQLAVNGGNKMTQYNITAGYTDQEGII 378
                  +   L+   +  TDWQ   ++ A  Q+H +++  G++ T++ ++  Y +QEG++
Sbjct: 301  V-----SGYGLDTTGV-GTDWQAAAFRDAPVQNHNISILSGSERTRFALSGNYFNQEGVL 354

Query: 379  MNTGLERYSFRLNLKSELAKRLVLQLNTSYSQTEQKQTSHSQSSSMNQMVRRILTTKPTL 438
             NT   RY+ RLN+  E  KRL +  +   S T       + + +   +V  +L T P+L
Sbjct: 355  QNTNFTRYAGRLNIDHEYNKRLRIFASVIGSST-------TANVAPANIVGNLLLTPPSL 407

Query: 439  MPGDQIYEDENVEYVPADNPYIMATELKDILQQ------RFFILNASLTYNFGKGLSWKG 492
                 IY+++    V +     +   +  +  Q        F+ N S  Y   +GL  K 
Sbjct: 408  ----PIYKNDGTFVVISPFESALQNPINSLYNQINQTKTNRFLGNVSAEYTIAEGLKAKI 463

Query: 493  AGSFNRTDGSRSTYYPIGTNAGNSAHGMAFRGEDNRQNIVLETTVNYDRKFKKHHHINAV 552
                + TD  ++ Y PI T  G +  G+A  G     + + E T++YD+ F + H INAV
Sbjct: 464  LFGADVTDNKQNRYLPITTGEGQALSGVATVGSLFTSSWLNENTLSYDKTFAEKHKINAV 523

Query: 553  LGYTHEDRQRKTLAIQVGDFAGNDLLYYAIGEGTNTMDKSSSVIQTKLSSFLGRMNYTLY 612
            +G+T +    K    +   FA +D  Y  IG G      SS+ IQ  L+S+LGR+NY   
Sbjct: 524  VGFTAQKSNTKGAVAEGAGFATDDYTYNNIGTGVTQRPASSTAIQWALASYLGRVNYVFD 583

Query: 613  DRYIFTATGRYDGSSLLASGNRWSFFPSFAVAWRINQEKFMKDIPAISNIKLRLSYGVTG 672
             RY+ T T R DGSS    GN+W +FPS A  W +  E F K+   IS +K+RLS G TG
Sbjct: 584  GRYLATLTLRADGSSRFGEGNKWGYFPSAAFGWNVTSESFAKEWKKISQLKVRLSAGYTG 643

Query: 673  NQSIAYAAPLAIMNHVRSYSGGAVTHGMVNGKLANPNLGWESTATYNAGLDLGFIDNRFR 732
            NQ+I   + L  + + R         G     + NPNLGWE T   +AG DLG  DNR  
Sbjct: 644  NQNIPPYSSLGQIGYYRYNFSNTTVAGFAPNNVGNPNLGWEKTLQVDAGFDLGLFDNRIA 703

Query: 733  VTMNVYQRTTKDMLMNFGLPLSSGYGSIPY---------NMGKMTNKGFELEASADILTG 783
            +T + Y + T D+L++  +P +SG  S PY         N+G++ NKG EL  +      
Sbjct: 704  ITADYYYKKTTDLLLSRSVPGTSGL-SDPYNAQASVVYQNIGEVANKGIELSLTTRNFIN 762

Query: 784  RVKWTLGGNIYLNRNKVDDISGNELLGTSYLAGGGVFSQSIHITKAGYPVGSFYGYVVDG 843
              KW+      +NRNKV  +         Y+      S    I K GYP+GSF  Y  DG
Sbjct: 763  EFKWSTTALFSVNRNKVLSLGDGV---NQYIPNNNAPS----IAKVGYPLGSFIVYQTDG 815

Query: 844  VYQNEAEAKLAPFDTPQA--TPGSLRFKDISGPDGLPDGKITSDDMTIIGTAEPKFNYGI 901
            V Q    A   P  TPQA  + G  ++KD++G     DGKIT  D  I+   +P F  G+
Sbjct: 816  VIQ----AGDVPL-TPQANKSAGGQKYKDLNG-----DGKITQGDDRIVIANQPGFLAGL 865

Query: 902  NSELSWKGLTLSMIFTGRVGGDIANLNRYFLDSFTDTNDNIRAEAWEGRWQGEGTSNFYP 961
             +  S+KG  +++     VGG + N NR  L+  T   +   +     RW    T+    
Sbjct: 866  TNTFSYKGFDVNVFLQANVGGKLYNQNRANLELATGYVNG--STELLNRWTPGNTNTDVK 923

Query: 962  AVNGSQGSSYFNKRFSTFLLEDGSFFRLKNLTLAY---QFSLKKLRWLRSVRVFGTVTNV 1018
            A       +      S   +E  S+ RLKN++L Y   +    K++  +++R++ +  N+
Sbjct: 924  AAFQDPAIT-----ISDRFIESSSYLRLKNVSLGYTLPKHIAAKIK-TQNIRIYVSGANL 977

Query: 1019 FTITNYSGYDPEVSIT-SGAMSPNVDYAAYPSSRTYSMGINLA 1060
             T T Y+G+DPE S+     ++  VD   YP+S++   G++L+
Sbjct: 978  VTWTKYTGFDPEASVNGQSLLAAGVDNGVYPNSKSVQFGLSLS 1020