Pairwise Alignments

Query, 1061 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1028 a.a., SusC/RagA family TonB-linked outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  550 bits (1416), Expect = e-160
 Identities = 365/1081 (33%), Positives = 558/1081 (51%), Gaps = 113/1081 (10%)

Query: 34   VSAQSHKISGVVVDEGKSPIIGATIQVKGANNGTITDIDGNFSLEVKNPKAQLQISYIGF 93
            V AQS  I GVV D  K  I G TIQVKG+   T TD +G + ++   P  QL  +Y+G+
Sbjct: 8    VFAQSRTIIGVVTDGQKQTIPGVTIQVKGSKIITQTDEEGRYRIQAL-PADQLVFNYVGY 66

Query: 94   TTITVPVQLKGKMTITMQEASRNLDEVVVIGYGTVRKSDLSGSVSAVSMKNEAEIMPITS 153
               TV V  K  + IT++ +S  L +VVVIGYG+  ++DLS S+++V M ++ E  P+ S
Sbjct: 67   QAETVSVGAKTTINITLKPSSIGLSDVVVIGYGSANRNDLSTSIASVKM-SDFEKAPVKS 125

Query: 154  ADQFLQGRIAGVSIAANSGAPGAGMNIQIRGVSTLSGNTDPLYVVDGFPIEAATASVNGG 213
             ++ L GR+AGV +A + G PGA  NI IRG  +++ +  PLYV+DGFP++ A  +    
Sbjct: 126  FEEALAGRVAGVQVAGSDGQPGAVSNIVIRGAGSITQDNSPLYVIDGFPMDNANNN---- 181

Query: 214  TSELSQQPAMNPLASINPNDIESIQVLKDASATAIYGSRATNGVILITTKQGKEGKVNVN 273
                          SINP+DIESI VLKDA+ATAIYGSR  NGVI I TK+GK GK  V 
Sbjct: 182  --------------SINPDDIESIDVLKDAAATAIYGSRGANGVIQIVTKRGKTGKPVVA 227

Query: 274  YNARVDISNISKRYNLLNAHDYALFENELD--RTSNGYDMQGNVIPSTKVPRHTDDALER 331
            YN    +   +KR  +++ +++    NELD   T+ GY ++G               LE 
Sbjct: 228  YNGYYGLQENTKRIAVMDPYNFVKLANELDPVGTAQGYFIEGR-------------TLES 274

Query: 332  YK-IYSTDWQDLMYQTAVSQDHQLAVNGGNKMTQYNITAGYTDQEGIIMNTGLERYSFRL 390
            Y+ +  TD+QD +++ A  Q+H L++ GG   T+Y+++  Y DQEGII+N+G  R   R 
Sbjct: 275  YQGLQGTDYQDQLFKIAPYQNHSLSLRGGADQTKYSLSTNYQDQEGIIINSGFSRIQSRF 334

Query: 391  NLKSELAKRLVLQLNTSYSQTEQ---KQTSHSQSSSMNQMVRRILTTKP---TLMP-GDQ 443
             L   ++K++   +N +YS T+       S + S+S+N +   I   +P   +L+P  DQ
Sbjct: 335  TLDHNVSKKVKAGINVNYSYTQSYGGPIGSSNFSASINTLY-SIWGYRPITGSLLPIDDQ 393

Query: 444  IYEDENVEYVPADNPY--IMATELKDIL------QQRFFILNASLTYNFGKGLSWKGAGS 495
            +Y+      +PA N Y    A  + D+       +      NA + Y   KGL  K  G 
Sbjct: 394  LYDPG----LPAVNVYSDYRANPILDLKNRINNNKSNNLDANAYVEYEIIKGLKLKSTGG 449

Query: 496  FNRTDGSRSTYYPIGTNAGNSAHGMAFRG---EDNRQNIVLETTVNYDRKFKKHHHINAV 552
             +  +   + +Y   T  G         G    +     + E T+ Y +K    H++NAV
Sbjct: 450  ISIANARVNAFYGSNTALGGPYTAQKVNGSIYNNTGSTWLNENTLTYAKKINNAHNLNAV 509

Query: 553  LGYTHEDRQRKTLAIQVGDFAGNDLLYYAIGEGTNTMDKSSSVIQTK------LSSFLGR 606
            +G++++  +  +      +     L       G + +D S+S++         + SF  R
Sbjct: 510  IGFSNQFAKTGSAGFSATNVPNESL-------GLDALDLSTSIVARSVNSTWGMQSFFTR 562

Query: 607  MNYTLYDRYIFTATGRYDGSSLLASGNRWSFFPSFAVAWRINQEKFMKDIPAISNIKLRL 666
            ++Y     Y+FTA+ R DGSS  A G +W +FP+ + AW+I  E F+KD   +S+ K+R 
Sbjct: 563  VSYDYKSTYLFTASYRADGSSRFAPGEKWGYFPAVSAAWKIKNESFLKDAKILSDAKIRT 622

Query: 667  SYGVTGNQSI---AYAAPLAI-MNHVRSYSGGAVTHGMVNGKLANPNLGWESTATYNAGL 722
            SYG TGN  +   AY + LA  +N   S++        + G   N  L WE++   N G+
Sbjct: 623  SYGETGNNRVSDFAYLSQLAFPLNQSYSFNNNPPELSAMIGTFGNEGLKWETSRQTNIGI 682

Query: 723  DLGFIDNRFRVTMNVYQRTTKDMLMNFGLPLSSGYGSIPYNMGKMTNKGFELEA-SADIL 781
            DLGF+  R  +T ++Y++ T D+L+N  LP ++G  +   N+G M N G EL   + +I 
Sbjct: 683  DLGFLKQRMLLTADIYRKKTSDLLLNAQLPYTTGASNAFKNVGAMQNDGLELTLNTVNIQ 742

Query: 782  TGRVKWTLGGNIYLNRNKVDDISGNELLGTSYLAGGGVFSQSI-----HITKAGYPVGSF 836
                +WT   NI  N+NKV  ++ N+     YLA    F         +I+  G  VG  
Sbjct: 743  NKNFRWTTNFNISFNKNKVVSLAENQ----QYLATTVGFDTRYSNIPPYISVLGQSVGQL 798

Query: 837  YGYVVDGVYQ--------NEAEAKLAPFDT-----PQATPGSLRFKDISGPDGLPDGKIT 883
            YG++ DG+YQ        N A A  +   T         PG ++FKDI+G     DG + 
Sbjct: 799  YGHIFDGIYQYSDFDKMPNGAYALKSNIPTNSNARANIKPGDIKFKDING-----DGVVN 853

Query: 884  SDDMTIIGTAEPKFNYGINSELSWKGLTLSMIFTGRVGGDIANLNRYFLDSFTDTNDNIR 943
              D TIIG   P    G ++  ++K   L++ F    G ++ N NR   +  T  N  + 
Sbjct: 854  EQDRTIIGRGLPLHVGGFSNNFTYKNFDLNVFFQWSYGNNLINANRLMFEGSTSNNPFLN 913

Query: 944  AEA-WEGRWQGEGTSNFYPAVNGSQGSSYFNKRFSTFLLEDGSFFRLKNLTLAYQFSLKK 1002
              A +  RW     SN Y    G   +      +S+ ++EDGS+ RLK ++L Y FS K 
Sbjct: 914  QFATYIDRWSPTNPSNTYYRAGGGINT------YSSNVVEDGSYLRLKTVSLGYNFSKKL 967

Query: 1003 LRWLR--SVRVFGTVTNVFTITNYSGYDPEVSITSGAMSPNVDYAAYPSSRTYSMGINLA 1060
            L  ++  S+RV+ +  N+FT+TNYSG DPEVS  +  ++P  D++AYP  RT   G+N +
Sbjct: 968  LDKIKLSSLRVYASAQNLFTMTNYSGPDPEVSTRNSVLTPGFDFSAYPRPRTIVFGLNTS 1027

Query: 1061 F 1061
            F
Sbjct: 1028 F 1028