Pairwise Alignments

Query, 1061 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1111 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  503 bits (1295), Expect = e-146
 Identities = 328/1029 (31%), Positives = 518/1029 (50%), Gaps = 62/1029 (6%)

Query: 41   ISGVVVDEGKSPIIGATIQVKGANNGTITDIDGNFSLEVKNPKAQLQISYIGFTTITVPV 100
            + G ++DE  + + G TI+VK  + GT +  DG F L+     A L ISYIG+ T  +  
Sbjct: 133  VKGKILDEKGNTLPGVTIKVKNGSIGTTSGSDGEFILKNVPEDAILVISYIGYATQEIKA 192

Query: 101  QLKGKMTITMQEASRNLDEVVVIGYGTVRKSDLSGSVSAVSMKNEAEIMPITSADQFLQG 160
              K  M I +   S NL++VVV+GYG  +K DL+G+VS +  K   E +PI   DQ LQG
Sbjct: 193  DQKADMAIKLLPKSDNLNDVVVVGYGITKKKDLTGAVSTID-KKAIENLPINRVDQMLQG 251

Query: 161  RIAGVSIAANSGAPGAGMNIQIRGVSTLSGNTDPLYVVDGFPIEAATASVNGGTSELSQQ 220
            + AGV + + +GAPG+G +I+IRG ++++G  +PLYV+DG       A +N         
Sbjct: 252  KAAGVQVTSTNGAPGSGASIRIRGGNSINGTNEPLYVIDGL----IGADIN--------- 298

Query: 221  PAMNPLASINPNDIESIQVLKDASATAIYGSRATNGVILITTKQGKEGKVNVNYNARVDI 280
                   ++NP DI S+ +LKDAS+TAIYG+R +NGV++ITTK+G  G  N+N+ A   +
Sbjct: 299  -------AVNPQDIASMSILKDASSTAIYGARGSNGVVIITTKKGAAGSDNINFEAYTGV 351

Query: 281  SNISKRYNLLNAHDYALFENELDRTSNGYDMQGNVIPSTKVPRHTDDALERYKIYSTDWQ 340
              + K   +LNA  YA   NE             V+  T +      +L       T+WQ
Sbjct: 352  QQLPKEIAMLNATQYAELANE-----------AAVLNGTPILYPNPQSLG----VGTNWQ 396

Query: 341  DLMYQTAVSQDHQLAVNGGNKMTQYNITAGYTDQEGIIMNTGLERYSFRLNLKSELAKRL 400
              + +TA   ++ L  +GG+K   Y ++  Y +QEGII+N+G  RY FR NL  +L   +
Sbjct: 397  REITRTAPMSNYTLGASGGSKGFNYFLSGNYNNQEGIILNSGFSRYQFRTNLSKQLRDNV 456

Query: 401  VLQLNTSYSQTEQKQTSHSQSSSMNQMVRRILTTKPTLMPGDQIYEDENVEYVPADNPYI 460
             +    +  +T  +  + S                    P       +  + +  DNP  
Sbjct: 457  TVGAMINVGRTVTRNNTVSLGGPSQSSATAYSPIAAVYNPDGSFTSQKPNDPLYYDNPVA 516

Query: 461  MATELKDILQQRFFILNASLTYNFGKGLSWKGA-GS---FNRTDGSRSTYYPIGTNAGNS 516
              T   +     +F  N +L +   KGL++K   GS   FN+ +    +  P   N+GN+
Sbjct: 517  QGTVPYNRTINSYFTGNLTLDWELIKGLTFKSTFGSQMTFNKVNRYLPSSLPSRVNSGNA 576

Query: 517  AHGMAFRGEDNRQNIVLETTVNYDRKFKKHHHINAVLGYTHEDRQRKTLAIQVGDFAGND 576
              GMA     N   ++ E T+NY++ F   H+ NAV+G +++    +    +   +  + 
Sbjct: 577  --GMANVDAANTIMVLNENTLNYNKDFGTDHNFNAVIGTSYQTESLERFNAEGQKYYADP 634

Query: 577  LLYYAIGEGTN-TMDKSSSVIQTKLSSFLGRMNYTLYDRYIFTATGRYDGSSLLASGNRW 635
            LLY  +G G+  T    S   +  + S+L R NYT  ++Y+ T TGR D SS  A+ ++ 
Sbjct: 635  LLYNNLGAGSQATFKIGSGETKYAIFSYLARFNYTYKNKYLLTLTGRSDASSRFAANHKR 694

Query: 636  SFFPSFAVAWRINQEKFMKDIPAISNIKLRLSYGVTGNQSIAYAAPLAIMNHVRSY-SGG 694
            +FFP+ A+AW  + E F+K++    N+K+R SYG  G+Q I     LA +  V  Y  GG
Sbjct: 695  AFFPAAAIAWNASNEDFIKNLNVFDNLKIRASYGSNGSQGIDTYQSLASLRPVIGYLIGG 754

Query: 695  AVTHGMVNGKLANPNLGWESTATYNAGLDLGFIDNRFRVTMNVYQRTTKDMLMNFGLPLS 754
                G  + +L NP+L WE+T  ++AG++   +  R  V ++ Y + T ++L+N  L   
Sbjct: 755  TNIVGFTSDRLPNPDLTWETTKQFDAGIEFSILKKRVNVELDYYNKVTSNLLLNQQLATQ 814

Query: 755  SGYGSIPYNMGKMTNKGFELEASAD-ILTGRVKWTLGGNIYLNRNKVDDISGNELLGTSY 813
            SGY S   N+G + N G EL  + D I+     W+   NI  NRNKV D+ G +    + 
Sbjct: 815  SGYSSKVTNIGSINNHGLELAINTDNIVRDGFSWSTTLNIAANRNKVLDLGGVQAFDNA- 873

Query: 814  LAGGGVFSQSIHITKAGYPVGSFYGYVVDGVYQNEAEAKLAPFDTPQATPGSLRFKDISG 873
              G G +S +I     G PVG+F+G    G  + +      P      +PG+ R  D   
Sbjct: 874  STGYGTYS-TISRLIVGQPVGTFWGTTYVGTKKTD-----TPPTGTATSPGNNRIGDALY 927

Query: 874  PDGLPDGKITSDDMTIIGTAEPKFNYGINSELSWKGLTLSMIFTGRVGGDIANLNRYFLD 933
             D   DGKI   D  +IG + PKF  G+ +  ++K  +L++ F G  G  + N++  F +
Sbjct: 928  QDLNGDGKIDVADYHVIGNSNPKFYGGLGNTFTYKKFSLNVFFQGSYGNQVMNISDNFNN 987

Query: 934  SFTDTNDNIRAEAWEGRWQGEGTSNFYPAVNGSQGSSYFNKRFSTFLLEDGSFFRLKNLT 993
            S +   +   + A   RW     S+  P +  +    Y     S+  + DGSF RL+  T
Sbjct: 988  SSSPGFNQYASVA--DRWTVNNQSSDIPRLPKTLDYIY-----SSRSVYDGSFLRLRTAT 1040

Query: 994  LAYQF--SLKKLRWLRSVRVFGTVTNVFTITNYSGYDPEV-SITSGAMSPNVDYAAYPSS 1050
            + +    S   ++W++ + V+ T TN++  T Y  YDPEV S  + +     DY  YP +
Sbjct: 1041 IGFNLTGSDMHVKWIQKLNVYVTGTNLWLWTKYPYYDPEVNSYGTNSTLRGFDYTDYPQN 1100

Query: 1051 RTYSMGINL 1059
            RT+ +G+NL
Sbjct: 1101 RTFILGLNL 1109