Pairwise Alignments

Query, 1061 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1049 a.a., SusC/RagA family protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  525 bits (1351), Expect = e-153
 Identities = 349/1092 (31%), Positives = 542/1092 (49%), Gaps = 94/1092 (8%)

Query: 19   RYLVLLICFLGYISTVSAQSHKISGVVVDEGKSPIIGATIQVKGANNGTITDIDGNFSLE 78
            R ++L +    Y    + +   + G+V DE   P+ GAT+  KG  N TIT  DG ++++
Sbjct: 3    RIIILFLLLTSYNFLFAQEVITVKGIVKDETNQPLPGATVNEKGTTNTTITGNDGGYTIK 62

Query: 79   VKNPKAQLQISYIGFTTITVPVQLKGKMTITMQEASRNLDEVVVIGYG-TVRKSDLSGSV 137
            VK+  A+L  SY+G  T    V  +  +   + + + NL+EVVV GYG TV + DL+G++
Sbjct: 63   VKS-NARLVFSYLGTKTSEQGVNGRTTINAKLIDDANNLNEVVVTGYGQTVARKDLTGAI 121

Query: 138  SAVSMKNEAEIMPITSADQFLQGRIAGVSIAANSGAPGAGMNIQIRGVSTLSGNTDPLYV 197
            S++  +  A++ P+ +  Q LQGR+AGV ++   G PGA  +I IRG ++++ + +PLYV
Sbjct: 122  SSIKGEELAKV-PVQNVGQALQGRLAGVQVSMADGTPGAAPSIVIRGGTSITQSNEPLYV 180

Query: 198  VDGFPIEAATASVNGGTSELSQQPAMNPLASINPNDIESIQVLKDASATAIYGSRATNGV 257
            VDG P                     + L+ ++P DIES+ VLKD SAT+IYG+R  NGV
Sbjct: 181  VDGVP-------------------QTDGLSFLDPMDIESVDVLKDVSATSIYGARGANGV 221

Query: 258  ILITTKQGKEGKVNVNYNARVDISNISKRYNLLNAHDYALFENELDRTSNGYDMQGNVIP 317
            +L+TTK+ KEGKV++NY+  V +  ++    ++N   Y L   E+  T         +  
Sbjct: 222  VLVTTKKIKEGKVSINYDGYVGVKKVTTFLPMMNPLQYTLLRYEVSATD-----PARLAS 276

Query: 318  STKVPRHTDDALERY-KIYSTDWQDLMYQTAV-SQDHQLAVNGGNKMTQYNITAGYTDQE 375
              K     D    RY      DWQ   +  AV +Q H++++NGG + T++N+     D  
Sbjct: 277  FLKNYGSFDSLQIRYGNRPGVDWQKESFGDAVVNQAHKISINGGGRETRFNVFYSRNDDN 336

Query: 376  GIIMNTGLERYSFRLNLKSELAKRLVLQLNTSYSQTEQKQTSHSQSSSMNQMVRRILTTK 435
            GI++NT   +   +++L   ++++  L    +Y+   QK T          ++  IL  +
Sbjct: 337  GILLNTASAKDIAKVSLSHNVSQKFNLSAIVNYAN--QKITGLGTGEGRLSLLNTILRYR 394

Query: 436  PTLMPGDQIYE---------DENVEYVPADNPYIMATELKDILQQRFFILNASLTYNFGK 486
            P +  G+  +          D N   V   +P +         + +   +NA+ +Y F K
Sbjct: 395  PVVGIGNDDFSLIDLDIDPLDPNPSSVLYQSPIVTLETQHRESRLKSLNMNATASYFFDK 454

Query: 487  GLSWKGAGSFNRTDGSRSTYYP----IGTNAGNSAHGMAFRGEDNRQNIVLETTVNYDRK 542
              +++G  +F   + S   +          +G +  G+   G    Q      T+ Y   
Sbjct: 455  HFTYRGLVNFTDNNNSARIFNDARSLFAQRSGGATGGV---GYSTAQQFNYNNTLTYANV 511

Query: 543  FKKHHHINAVLGYTHEDRQRKTLAIQVGDFAGNDLLYYAIGEGTNTMDKSSSVIQTKLSS 602
            F K H ++  +G  +     ++L     +F   +L +  +  GT T    ++   +KL S
Sbjct: 512  FNKDHKLDVSVGQEYIYNYNQSLLTASTNFPSINLGWDKLQLGTVTSFPVTAAEDSKLLS 571

Query: 603  FLGRMNYTLYDRYIFTATGRYDGSSLLASGNRWSFFPSFAVAWRINQEKFMKDIPAISNI 662
            F  R NY+   +Y+ TAT R DGSS   + N W +FPS AV+WR  +EKFMK     S++
Sbjct: 572  FFSRANYSYKGKYLLTATLRADGSSKFGANNTWGYFPSAAVSWRAIEEKFMKQQHIFSDL 631

Query: 663  KLRLSYGVTGNQSIAYAAPLAIMNHVRSYSGGAVTHGMVNGKLANPNLGWESTATYNAGL 722
            KLRLSYGV GN  IA  A L I N         +        LANP+L WES    N GL
Sbjct: 632  KLRLSYGVAGNNRIANYAALGIYNAGVYPLNDQLISASFQENLANPSLKWESLKALNIGL 691

Query: 723  DLGFIDNRFRVTMNVYQRTTKDMLMNFGLPLSSGYGSIPYNMGKMTNKGFELEA-SADIL 781
            D+G +  R  +T   Y   +KD+L N  +P SSG+ +   N+G  +++G E+   S +I 
Sbjct: 692  DIGLLKQRITLTTEYYDNRSKDLLFNTRIPASSGFNTQFQNIGTTSSRGLEMTLNSTNIR 751

Query: 782  TGRVKWTLGGNIYLNRNKVDDISGNELLGTSYLAGGGVFSQSIHITKAGYPVGSFYGYVV 841
            T    WT   N+     KV  +S  E   TS LA G + S   +I + G PVG  YGYV 
Sbjct: 752  TTNFNWTTNLNVAFTNTKVLSLSDGE---TSRLADGNIASD--YILQVGSPVGVMYGYVK 806

Query: 842  DGVYQ--------NEAEAKLAP---FDTPQATPGSLRFKDISGPDGLPDGKITSDDMTII 890
            +G+YQ              L P    D     PG ++FKDISGPDG+PDG I + D   +
Sbjct: 807  EGLYQVSDFNYNPTTNAYTLKPGVVRDAVTVQPGFIKFKDISGPDGVPDGIINNFDRVPL 866

Query: 891  GTAEPKFNYGINSELSWKGLTLSMIFTGRVGGDIANLNRYFLDSFTDTNDNIRAEAWEGR 950
            G A+PKF+ G+ +  S+KG  LS+     +G  + N NR      T    N  A ++  R
Sbjct: 867  GNAKPKFSGGLGNNFSYKGFDLSVFVNFSLGNKVYNANRLTNSDLTLDYVNTFA-SFADR 925

Query: 951  WQGEGTS----------------NFYPAVNGSQGSSYFNKRFSTFLLEDGSFFRLKNLTL 994
            W    TS                   P+ NG   S  +++     ++EDGSF R+ N++L
Sbjct: 926  WTTINTSGARVTSPVELAALNQGKTIPSYNGGGSSRLYDE-----IIEDGSFLRINNVSL 980

Query: 995  AYQFSLKKLRWLRSV-----RVFGTVTNVFTITNYSGYDPEVSITSGAMSPNVDYAAYPS 1049
             Y F  K   WL +V     RV+ T  N++  T Y GYDPEVS+ +  ++P +D +AYP 
Sbjct: 981  GYTFPKK---WLSAVKIANARVYFTAYNLYVFTKYKGYDPEVSVVNNPLTPGIDASAYPR 1037

Query: 1050 SRTYSMGINLAF 1061
            ++++  G+NL+F
Sbjct: 1038 AKSFLAGLNLSF 1049