Pairwise Alignments

Query, 1061 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1049 a.a., SusC/RagA family TonB-linked outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  518 bits (1334), Expect = e-151
 Identities = 344/1080 (31%), Positives = 545/1080 (50%), Gaps = 76/1080 (7%)

Query: 22   VLLICFLGYISTVSAQSHKISGVVVDEGKS-PIIGATIQVKGANNGTITDIDGNFSLEVK 80
            + L+C + Y     +Q+ K+ G V ++G    ++G ++ VKG   G  TD DG+++++V 
Sbjct: 6    LFLMCMI-YALGAFSQTRKVEGTVTEQGSGIALVGVSVSVKGTKTGASTDKDGHYAIQVS 64

Query: 81   NP-KAQLQISYIGFTTITVPVQLKGKMTITMQEASRNLDEVVVIGYGTVRKSDLSGSVSA 139
               K+ L  SY+G+    +PV  KG + +++    + L +VVV+GYGT +K DL  SV  
Sbjct: 65   TKEKSTLVFSYVGYLQREMPVGDKGVINLSLASDEKALGDVVVVGYGTSKKGDLVSSVGQ 124

Query: 140  VSMKNEAEIMPITSADQFLQGRIAGVSIAANSGAPGAGMNIQIRGVSTLSGNTDPLYVVD 199
            V M + A+  P+ S D+ L GR+AGV + ++ G PG+ +NI IRG ++++ N  PLYVVD
Sbjct: 125  VDMNDMAKA-PVRSIDESLAGRVAGVQVNSSDGQPGSSVNIVIRGANSITQNNSPLYVVD 183

Query: 200  GFPIEAATASVNGGTSELSQQPAMNPLASINPNDIESIQVLKDASATAIYGSRATNGVIL 259
            GFPIE    +V                   +P ++ESI VLKDASATAIYG+R  NGVI+
Sbjct: 184  GFPIEGFNLNV------------------FDPQEVESIDVLKDASATAIYGARGANGVIM 225

Query: 260  ITTKQGKEGKVNVNYNARVDISNISKRYNLLNAHDYALFENELDRTSNGYDMQGNVIPST 319
            ITTK+GK G   ++++  V   N  K   L+N++D+A  + EL   + G     +  P  
Sbjct: 226  ITTKKGKMGAPVISFSPTVSFDNNIKTMELMNSYDFAKMQLELVPGAPG--SANDPTPIY 283

Query: 320  KVPRHTDDALERYK-IYSTDWQDLMYQTAVSQDHQLAVNGGNKMTQYNITAGYTDQEGII 378
             +       LE Y+   +TDWQ   +QT + QD+ LA+ GG   T Y ++    DQ+G I
Sbjct: 284  ILLTRPGKTLEDYRNAPATDWQSPFFQTGLRQDYSLALRGGTDKTIYALSGNLNDQKGTI 343

Query: 379  MNTGLERYSFRLNLKSELAKRLVLQLNTSYSQTEQKQTSHSQSSSMNQMVRRILTTKPTL 438
            +NT  +RY  R+ L   L+K++ + +N +Y+   +   S +Q +        IL +    
Sbjct: 344  INTAYKRYQGRITLDQTLSKKIKVGVNANYAYLLRSGNSAAQGTG-GSGTTNILYSVWGY 402

Query: 439  MPGDQIYEDENVEYVPAD------NPYIMATELKDILQQRFFILNASLTYNFGKGLSWKG 492
             P  ++ EDE ++   A       NP +    L    +     ++    Y     L  K 
Sbjct: 403  SPLSELTEDEAIDETTASGVDYKFNPIMNQNNLLRNNKTHNLNVSGYFDYAITDNLKLKI 462

Query: 493  AGSFNRT-----DGSRSTYYPIGTNA--GNSAHGMAFRGEDNRQNIVLETTVNYDRKFKK 545
             G  N T     + + S  YP   N   G ++       E N  N   E T+ + + + K
Sbjct: 463  TGGINNTRVISEEFNNSKTYPGSPNTTPGRTSGVNGSIAEANTNNWSNENTLTWTKTYNK 522

Query: 546  HHHINAVLGYTHEDRQRKTLAIQVGDFAGNDLLYYAIGEGT-NTMDKSSSVIQTKLSSFL 604
             H++N + G++ +                  L    + EG  N +  ++S + T LSSF 
Sbjct: 523  SHNLNILGGFSTQGNTSNAFGFGATFLPNEKLGLSGLNEGILNPVTIATSSLWT-LSSFF 581

Query: 605  GRMNYTLYDRYIFTATGRYDGSSLLASGNRWSFFPSFAVAWRINQEKFMKDIPAISNIKL 664
            GR+ Y    +Y   A+ R DGSS  A GN+WS+FPS   +WR  +E F+K+   +S  KL
Sbjct: 582  GRIKYNFKSKYYLEASYRADGSSKFADGNKWSYFPSIGGSWRFIKEDFLKNSKVLSEGKL 641

Query: 665  RLSYGVTGNQSIAYAAPLAIMNHVRSYS---GGAVTHGMVNGKLANPNLGWESTATYNAG 721
            R S+G TGN  +   A L+  + V   S     +    ++   L NP + WE+T  Y+AG
Sbjct: 642  RASFGKTGNNRVNDFAYLSSNDVVPGNSYPWNNSYVSSIIPTSLGNPKVKWETTDQYDAG 701

Query: 722  LDLGFIDNRFRVTMNVYQRTTKDMLMNFGLPLSSGYGSIPYNMGKMTNKGFELEASA-DI 780
            +DLGF+ NR  +T +VY++ TKD+L+   LP SSGY S   N+G + N+G E+  S  +I
Sbjct: 702  VDLGFLKNRISLTADVYKKNTKDLLLRATLPTSSGYTSAFKNVGAVANRGLEISLSTINI 761

Query: 781  LTGRVKWTLGGNIYLNRNKVDDISGNE--LLGTSYLAGGGVFSQSIHITKAGYPVGSFYG 838
                 +W    NI  NRNKV  ++ ++  LL T+          S +I K G P+G  YG
Sbjct: 762  SNKNFQWNSSFNISFNRNKVLALAEDQQTLLSTTNWDNAYTNIPS-YIAKIGEPLGLMYG 820

Query: 839  YVVDGVYQ------NEAEAKLAPFDTP-------QATPGSLRFKDISGPDGLPDGKITSD 885
            ++ DGVYQ            L   + P          PG +R++D++G     DG + + 
Sbjct: 821  FIWDGVYQYSDFNRTSTGEYLLKDNVPANGSARQNIQPGDIRYRDLNG-----DGNVNAS 875

Query: 886  DMTIIGTAEPKFNYGINSELSWKGLTLSMIFTGRVGGDIANLNRYFLDSFTDTNDNIRA- 944
            D  +IG + P    G ++  ++K   L++ F    G DI N+NR   +        ++  
Sbjct: 876  DYAVIGNSLPLHTGGFSNNFTYKQFDLNVFFQWSYGNDIQNINRQVFEGNALGKRFLQQY 935

Query: 945  EAWEGRWQGEGTSNFYPAVNGSQGSSYFNKRFSTFLLEDGSFFRLKNLTLAYQFS---LK 1001
             ++  RW  E  ++      G   + Y     S+  +EDGSF RLK ++L Y      L 
Sbjct: 936  SSYTDRWSPENQASSNYRTGGFSVAGY-----SSRTIEDGSFLRLKTVSLGYNIPKPLLD 990

Query: 1002 KLRWLRSVRVFGTVTNVFTITNYSGYDPEVSITSGAMSPNVDYAAYPSSRTYSMGINLAF 1061
            +++ +++ R+F +  N++T T Y+G DPEVS  S  ++   DY+AYP +RT + G N+ F
Sbjct: 991  RVK-IKTARIFVSGQNLYTWTKYTGLDPEVSTYSSVLTGGFDYSAYPRARTIAFGANVTF 1049