Pairwise Alignments

Query, 1061 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1037 a.a., SusC/RagA family protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  494 bits (1273), Expect = e-143
 Identities = 337/1066 (31%), Positives = 530/1066 (49%), Gaps = 74/1066 (6%)

Query: 7    IMKQKIRFKLTDRYLVLLICFLGYISTVSAQSHKISGVVVDEGKSPII-GATIQVKGANN 65
            I ++KI F     +L+L++   G+  T    +  ++G V D      + G  + + G  +
Sbjct: 31   IGRKKITFSFLILFLLLVLSKNGHAQTTPLINSTLTGTVRDARTGETLPGVNVGINGTTH 90

Query: 66   GTITDIDGNFSLEV--KNPKAQLQISYIGFTTITVPVQLKGKMTITMQEASRNLDEVVVI 123
              +TD +G F      K P   L IS++G+ T+ V V     + + ++E    L+ VVV+
Sbjct: 91   TALTDNNGIFRFVTGQKFPYT-LTISFVGYKTLQV-VANGSPLEVKLEEQVNTLNNVVVV 148

Query: 124  GYGTVRKSDLSGSVSAVSMKNEAEIMPITSADQFLQGRIAGVSIAANSGAPGAGMNIQIR 183
            GYGT +KSD +GS+S+V    E + +P+ S D+ +QG I+G  +  +SG PG G++I++R
Sbjct: 149  GYGTQKKSDFTGSLSSVP--TELKGVPVASPDRLIQGAISGAQVTQSSGQPGGGVSIRVR 206

Query: 184  GVSTLSGNTDPLYVVDGFPIEAATASVNGGTSELSQQPAMNPLASINPNDIESIQVLKDA 243
            G ++++   +PLYV+DGFP+    ASV+ G   ++  PA+NPL++INP DIESI VLKDA
Sbjct: 207  GGTSINAGNEPLYVIDGFPVYNGDASVDAG---ITNGPAINPLSAINPADIESIDVLKDA 263

Query: 244  SATAIYGSRATNGVILITTKQGKEGKVNVNYNARVDISNISKRYNLLNAHDYALFENELD 303
            SATAIYGSR  NGVILITTK+G +   ++NY+       +SK   +LNA ++   +N+  
Sbjct: 264  SATAIYGSRGANGVILITTKRGSKNSFSINYSGYYGTQKVSKNIGVLNAREWGALKNDA- 322

Query: 304  RTSNGYDMQGNVIPSTKVPRHTDDALERYKIYSTDWQDLMYQTAVSQDHQLAVNGGNKMT 363
                       +  + K P +T   L++     TDWQ   ++TA  Q+H L+++ GN+ T
Sbjct: 323  -----------LTDAGKAPFYTQAQLDQLG-EGTDWQSEAFRTAPVQNHSLSISSGNEKT 370

Query: 364  QYNITAGYTDQEGIIMNTGLERYSFRLNLKSELAKRLVL--QLNTSYSQTEQKQTSHSQS 421
            +  ++  Y  QEG+I+NTG +RYS +LN+  E+  +  L   LN S +  +   +     
Sbjct: 371  RLLLSGNYFKQEGVILNTGFDRYSAKLNIDHEVNAKFKLGAYLNGSITHADVAPSG---- 426

Query: 422  SSMNQMVRRILTTKPTLMPGDQI--YEDENVEYVPADNPYIMATELKDILQQRFFILNAS 479
                 +V  IL+  P +   D    +   +       NP    +   +  +   F+ N+ 
Sbjct: 427  -----IVANILSMVPVVPVKDANGNFTANSSFGATVANPIATLSLQTNETKTTRFLANSF 481

Query: 480  LTYNFGKGLSWKGAGSFNRTDGSRSTYYPIGTNAGNSAHGMAFRGEDNRQNIVLETTVNY 539
              Y    GL+ + +   +  +  ++ Y P          G A  G  +  N + E T+NY
Sbjct: 482  GEYTIIDGLTARVSLGADIINNKQNRYLPSALYESLPG-GNASIGALSTLNWLNENTINY 540

Query: 540  DRKFKKHHHINAVLGYTHEDRQRKTLAIQVGDFAGNDLLYYAIGEGTNTMDKSSSVIQTK 599
             +     H  + +LG T +    +       +F  +   Y  +  GT     +S   +  
Sbjct: 541  KKTVNGKHSFDILLGNTQQKSVTEVFTAGTSNFVSDAFKYNNLASGTVLATPTSLKTEWA 600

Query: 600  LSSFLGRMNYTLYDRYIFTATGRYDGSSLLASGNRWSFFPSFAVAWRINQEKFMKDIPAI 659
            L SFL R+NY   ++Y+ T T R DGSS     N+W  FPS A+AW  + E F++ I AI
Sbjct: 601  LQSFLARINYAYDNKYLLTLTARADGSSRFGINNKWGTFPSAAIAWNASNEGFLQGIKAI 660

Query: 660  SNIKLRLSYGVTGNQSIAYAAPLAIMNHVRSYSGGAVTHGMVNGKLANPNLGWESTATYN 719
            S++K R S GVTGNQ I     L+ ++  +      + +G+     ANP+L WE TA YN
Sbjct: 661  SSLKFRFSAGVTGNQEIDPYRSLSRLSSYQYTFANTLVNGLAIASFANPDLTWEKTAQYN 720

Query: 720  AGLDLGFIDNRFRVTMNVYQRTTKDMLMNFGLPLSSGYGSIPYNMGKMTNKGFELEASAD 779
             G+DL     R ++T +VY + T D+L+   +P SS   S   N+G + NKG EL     
Sbjct: 721  FGIDLELFSGRIQLTTDVYYKRTSDLLLEVPVPYSSSLTSAFQNLGVVRNKGVELGLKTI 780

Query: 780  ILTGRVKWTLGGNIYLNRNKVDDISGNELLGTSYLAGGGVFSQSIHITKAGYPVGSFYGY 839
               G   WT       NRNK+  + G      +  A          I K G  VG+FY Y
Sbjct: 781  NFQGDFNWTTNLIFSANRNKIITLGGAPYFFVTDPASPTTL--PTQIIKVGESVGAFYMY 838

Query: 840  VVDGVYQNEAEAKLAPFDTPQATPGSLRFKDISGPDGLPDGKITSD-DMTIIGTAEPKFN 898
              DGV                   G  ++KD++G     DG IT D D  I+G+++PKF 
Sbjct: 839  ETDGV---------------NPATGLQKYKDLNG-----DGAITQDADRKIVGSSQPKFL 878

Query: 899  YGINSELSWKGLTLSMIFTGRVGGDIANLNRYFLDSFTDTNDNIRAEAWEGRWQGEG-TS 957
              I +    K   LS+ F    G  I N  R  L+  T     +       RW      +
Sbjct: 879  ASITNTFRCKNFDLSVFFNASYGNKIFNWTRANLELGTGYTGAVATLL--DRWTPTNRNT 936

Query: 958  NFYPAVNGSQGSSYFNKRFSTFLLEDGSFFRLKNLTLAYQFS---LKKLRWLRSVRVFGT 1014
            + + A+     +       S   +EDG+F RLKN+++ Y      L KL+ L ++RV+ +
Sbjct: 937  DVHKAIENPAVT------ISDRFVEDGAFIRLKNVSIGYSIPGRLLSKLK-LSALRVYVS 989

Query: 1015 VTNVFTITNYSGYDPEVSIT-SGAMSPNVDYAAYPSSRTYSMGINL 1059
             +N++T T Y+GYDPEVS     ++S  +D AAYP++++   GI+L
Sbjct: 990  GSNLYTWTKYTGYDPEVSTNGQNSISTGMDRAAYPNAKSIQGGISL 1035