Pairwise Alignments

Query, 1061 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1043 a.a., SusC/RagA family TonB-linked outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  506 bits (1303), Expect = e-147
 Identities = 352/1065 (33%), Positives = 548/1065 (51%), Gaps = 81/1065 (7%)

Query: 34   VSAQSHKI-SGVVVDEGKSPIIGATIQVKGANNGTITDIDGNFSLEVKNPKAQLQISYIG 92
            V  Q+ KI +G V DE   PI G  I+   +    +TD  G FS+E  NP   ++ SY+G
Sbjct: 19   VHIQNRKIITGTVSDEKNMPIPGVGIKNISSGKTAVTDEAGKFSIEA-NPNDVIRFSYVG 77

Query: 93   FTTITVPVQLKGKMTITMQEASRN-LDEVVVIGYGTVRKSDLSGSVSAVSMKNEAEIMPI 151
            +    V V  +  +++ M  A  N LDEVVVIGYG+V+K+DL+GSV  V   +E +  P 
Sbjct: 78   YQNKDVTVGNEANISVKMVPAEANKLDEVVVIGYGSVKKTDLTGSVGVVKA-SELQERPS 136

Query: 152  TSADQFLQGRIAGVSIAANSGAPGAGMNIQIRGVSTLSGNTDPLYVVDGFPIEAATASVN 211
            +S +Q L GRI+GV +  NSG PG   NI+IRG S+++ + +PLYVVDG  +   + + N
Sbjct: 137  SSLNQALAGRISGVQVNTNSGRPGGQTNIKIRGFSSINTSNNPLYVVDGVALPVGSQTQN 196

Query: 212  GGTSELSQQPAMNPLASINPNDIESIQVLKDASATAIYGSRATNGVILITTKQGKEGKVN 271
                        N +  INP+DI S++VLKDAS+TAIYG+R  NGVILITTK+G      
Sbjct: 197  S-----------NAIDYINPSDIASVEVLKDASSTAIYGARGANGVILITTKKGSANAQR 245

Query: 272  VNYNARVDISNISKRY-NLLNAHDYALFENELDRTSNGYDMQG---NVIPSTKVPRHTDD 327
            + Y+A   ++ ++  +  +L+A +Y   ++        YD  G       ST VP+ +  
Sbjct: 246  ITYDADFGVNTLAAHHVKMLDAFEYVKVQDLAYENIKVYDPVGWAAGNYASTPVPKASRI 305

Query: 328  ALERY------KIYSTDWQDLMYQTAVSQDHQLAVNGGNKMTQYNITAGYTDQEGIIMNT 381
            AL ++       +Y+TDW     Q  +SQ+HQL   GGN+ + Y + AGY D +G+++N+
Sbjct: 306  ALPQFFDGNGNPLYNTDWLKESTQNKLSQNHQLGFTGGNENSTYGVFAGYRDDQGLLLNS 365

Query: 382  GLERYSFRLNLKSELAKRLVLQLNTSYSQTEQKQTSHSQSSSMN-QMVRRILTTKPTLMP 440
             L+RYS R N  S++   L +  N SY+  ++           + +M+       P  + 
Sbjct: 366  YLKRYSGRFNFDSKIKPWLKVGGNLSYNNQDENIVDQGTGGLNSVRMITEAFPFLPIKLA 425

Query: 441  GDQIYEDENVEYVPA-DNPYIMATELKDILQQRFFILNASLTYNFGKGLSWK---GAGSF 496
              +  +++ + +     NP  + T+ K  +  +  + +   T +F K L ++   GA   
Sbjct: 426  DGKWGDNKLIPWAEGGSNPVHILTDQKYGMITQTALGSIYSTISFNKDLEFRTQLGANVV 485

Query: 497  NRTDGSRSTYYPIGTNAGNSAHGMAFRGEDNRQNIVLETTVNYDRKFKKHHHINAVLGYT 556
            +R     +     G + G +  G A    D      LE  + Y+++F + H INA+LG +
Sbjct: 486  SRNINEYNAKQLYGISDGQN--GTANVTNDRETFWSLENYLTYNKRFAESHAINALLGIS 543

Query: 557  HEDRQRKTLAIQ----VGDFAGNDLLYYAIGEGTNTMDKSSSVIQTKLSSFLGRMNYTLY 612
             +     +        V DF GN+ +    G G+ ++   SS  ++  +S+ GR+NY   
Sbjct: 544  WQATSFFSNTSHAENFVTDFYGNNNM----GSGSKSITVGSSRNRSAFNSYFGRLNYAFK 599

Query: 613  DRYIFTATGRYDGSSLLASGNRWSFFPSFAVAWRINQEKFMKDIPAISNIKLRLSYGVTG 672
            D+Y+ T TGR DGSS     ++++FFPS A+AW+ + E F+K    ISN+KLR SYG++G
Sbjct: 600  DKYLVTFTGRVDGSSKFGENHKFAFFPSAALAWKASDEDFLKGNKTISNLKLRTSYGLSG 659

Query: 673  NQSI-AYAAPLAIMNHVRSYSGGAVTHGMVNGKLANPNLGWESTATYNAGLDLGFIDNRF 731
            N  + AY +   ++N+    + G VT G+  G+LANP+L WE TA  +AGL+LG  +NR 
Sbjct: 660  NSELPAYQSLATLVNNSAIINDGKVT-GIGIGRLANPDLVWEKTAQVDAGLELGLFNNRI 718

Query: 732  RVTMNVYQRTTKDMLMNFGLPLSSGYGSIPYNMGKMTNKGFELEA-SADILTGRVKWTLG 790
             +  ++Y R T DML++  +P ++GY  I  N+G M NKG +L   + +I T    W   
Sbjct: 719  NLEADLYYRKTTDMLLDAPVPRTTGYSVIRKNIGSMQNKGLDLGINTVNIQTDDFTWKTS 778

Query: 791  GNIYLNRNKV------DDISGNELLGTSYLAGGGVFSQSIHITKAGYPVGSFYGYVVDGV 844
             NI LNRNKV      DDI G          G   F+    I + G PVGSF+G V  G 
Sbjct: 779  FNISLNRNKVLSLATPDDIFG---------VGNPNFTNQTGIIRVGEPVGSFWGLVRLGT 829

Query: 845  YQNEAEAKLAPFDTPQA----TPGSLRFKDISGPDGLPDGKITSDDMTIIGTAEPKFNYG 900
            +     A+ A + + +      PG +++ D++G     D  IT  D  IIG   PK    
Sbjct: 830  WSEAERAEAAKYVSYRGGKTLLPGDIKYLDVNG-----DHAITDADRQIIGNGTPKGWGS 884

Query: 901  INSELSWKGLTLSMIFTGRVGGDIANLNRYFLDSFTDTNDNIRAEAWE---GRWQGEGTS 957
              +   +K L L +      G D+ N+  +     +  +  ++A ++      W  +  +
Sbjct: 885  FGNSFRYKNLELIVELQYSYGNDVLNMTHH-----SGEDRQVQANSFASVLNAWTPQNQN 939

Query: 958  NFYPAVNGSQGSSYFNKRFSTFLLEDGSFFRLKNLTLAYQFS---LKKLRWLRSVRVFGT 1014
                A+   Q + Y      T  LEDGSF R KNL L Y F    ++KLR L  +RV+ +
Sbjct: 940  TPIAAIR-DQSAGYVT-NVDTHWLEDGSFIRGKNLLLGYTFDKTLVEKLR-LSKLRVYAS 996

Query: 1015 VTNVFTITNYSGYDPEVSITSGAMSPNVDYAAYPSSRTYSMGINL 1059
            V N F  T Y+G DPEV+    A +    +  YP   T+ +G+N+
Sbjct: 997  VQNFFLATKYTGNDPEVTTYGNAFAQGQTFFDYPKPTTFMVGLNI 1041