Pairwise Alignments

Query, 1343 a.a., two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1347 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  539 bits (1389), Expect = e-157
 Identities = 385/1362 (28%), Positives = 665/1362 (48%), Gaps = 103/1362 (7%)

Query: 36   FKQLSITEGLSHNTVNAISQDSKGFMWFGTRNGLCRYDGYNITRYFHEEGDSTTISHDFI 95
            F  L I +GLS+N+VNAI +D  GFMWFGT +GL +Y+GY+   Y +   DS+++ ++ +
Sbjct: 27   FSHLGIEKGLSNNSVNAIYKDHFGFMWFGTDDGLNQYNGYSFRIYRNNPNDSSSLVNNQV 86

Query: 96   TKLYNDPCRNVLWISTEQGICKYNPQNEQFTR------------------YHIEGNNKNS 137
              +  D     LWI+T++G+   +    +F +                  Y I+G N   
Sbjct: 87   IGMAEDGS-GTLWIATKRGVSVLHSFPSKFVKPIFKAYNDKKARPIDQEIYAIKGGNHGD 145

Query: 138  VLFLNTSDSRLLTGCSNGIYQYDNEKNSFTPFILNEGKGE----NIRGLVEDSNNVLWIN 193
            V F+  SD  LL         YDN            G+      +IR +    +    IN
Sbjct: 146  V-FIGASDLGLLV--------YDNHSRETRQVSFQPGEKVLTPYSIRAIRPVQDRAWLIN 196

Query: 194  SNKGVKRYNLKKEQFEPLPLNIRPFLETCIQLVMLPGNQLLFNTPQEVFVYNINNDSL-- 251
              KG+  Y+ + +Q   +  N    +     +       L   T   ++ YNI   S   
Sbjct: 197  PAKGLAYYDYRSKQISLVSSN--GDIRNANSIEADQSGNLWIGTDHGLYRYNILAKSFKW 254

Query: 252  YPLAAIKDIRQ-FRCATTDTMNNIWLGTENGIFIYDQTFRLVTHYQQSESDLSNLNDSPI 310
            Y +A  + + Q       D  N + + T+ G      T +    YQ +    S+LN + I
Sbjct: 255  YSVAPGQLLAQRILSLAFDRRNRLLIATDGGGINIMDTEKESFSYQTAGESPSSLNSNAI 314

Query: 311  YSLFEDYNHNMWVGTYFGGVNYFIYASDQFR-IYPYGNSPNHLSGKAVRQIINTPDNGLY 369
              + +D  H +WVGT  GG+N      ++F+ IY    S   L    +       D  ++
Sbjct: 315  SVILKDEEHRIWVGTLRGGINVLDRKRNEFKHIYRNPLSQQSLVSDFILSFCEDRDGKIW 374

Query: 370  IATEDGGLNYLNSNREITRSERLHERMN---IKARNIHSLLIDSKQNLWIGLFLRGMNYY 426
            I T+ GG++  +  +        HE  N   + + N+ S++  +   +WI  F  G+N Y
Sbjct: 375  IGTDGGGISLWDRLKGFKTYR--HENGNPQSLSSNNVTSIVRSNNDVIWIATFGGGINRY 432

Query: 427  MPKEN--KTLSFNDGMGKNSSGFCIIEDETGKIWYGGPSGLFTLKKQN---------GSF 475
                   K     +  GK+ + + +  D+ G IW G   G+  L   N          + 
Sbjct: 433  NRGSGTFKYYPCANSWGKDENVWKLFIDKKGGIWAGTCVGVGLLYHYNVASDRFEPFNNE 492

Query: 476  QLKKVSALPVFCMLNLNDSIIWTGNRQNGIYQINKRTEEQTPLPQFSSSKLYMTY----- 530
             LK + A+    + NL     W G+        NK       L ++++    +TY     
Sbjct: 493  HLKNIIAINEDKLGNL-----WFGS-------FNK-------LYKYTAGGKVITYDIRYP 533

Query: 531  ---LYMDSQGNIWAGTNNDGLFVLNKKGEKLKSYSKKE-LGSNAIKGIIEDDQNTIWIGT 586
               ++ +  G+++ GT   GL   N K    +++++ + L +N +  I EDD   +W+ T
Sbjct: 534  IRSIFFNKSGDLFVGTQYAGLLKYNSKNGSFQAFTESDGLSNNTVLNIEEDDHANLWLST 593

Query: 587  DNGLCNIQPKSGLISRYTIADGLPTNQFNYSSVCKKPDGELFFGTINGMISFYPEQVRPV 646
             NGL     ++   +++ I +GL  N+FNY++      G+L FG I G   F P+ +   
Sbjct: 594  FNGLTKFNYRNNTFNKFYIENGLQCNEFNYNASAHLRSGQLLFGGIKGFNIFNPDSIMNN 653

Query: 647  EPHFNIALTGVWSNNDVVSSSNPDALLPASISESDVMTLTHEQAQSIRIEYSGLNYQYKD 706
                 + LT + ++N+ + S   DA   AS+ ++  + + +++A  +  +YS L Y +  
Sbjct: 654  SAFPPLRLTDLRASNEPLIS---DAAYSASLYDTKEIKIPYDRAL-LSFDYSALEYSFPS 709

Query: 707  KTQYAMKLEGIDKEWQFVGNQHQVRFSNLPTGDYTLKIKASNDGVNWDEKGQKELTIHVL 766
            +  Y+  LEG++  W  V       +S L  G Y L I+++N    W+ + Q  L I +L
Sbjct: 710  RISYSYYLEGLENNWNNVRTARSGNYSRLHEGTYVLHIRSTNGEGIWNPR-QLTLKIIIL 768

Query: 767  PPWWLSIWAYLTYVCMVLCIIYLAYKYTKARLILLMRLKTEHEQRVNMEKMNQSKINFFT 826
            PPW+ S WAYLTY+ ++  ++Y   +Y   ++ L  +++          ++N+ K++FFT
Sbjct: 769  PPWYRSWWAYLTYLAIISYLLYRFNRYKSNQVRLNYQIEMATANAEKERELNERKLSFFT 828

Query: 827  YVSHDLKTPLTLILSPLQRLIKQ--KQIDNNDREKLEVIYRNANRMHYLIDELLTFSKIE 884
            ++SH+ ++PLTLI++P++ L+    K ID +D   L ++Y NA R+  L+D+LL F K +
Sbjct: 829  HISHEFRSPLTLIINPVKELLYSSGKNIDVSD---LSIVYLNAKRLLSLVDQLLLFRKAD 885

Query: 885  MQQMEINVRKGNIMHFLEEISHIFDIVSKEKEIDFIVSLEETDEEVWFSPSKLERIMYNL 944
             ++ ++ + K NI+   +++   F   ++ K ID      E   E++    K+E +++N+
Sbjct: 886  HEEDDLKISKLNIVLVCKDVFLCFTSQARLKNIDITFESAEEYIEIFADREKIEIVLFNI 945

Query: 945  LSNAFKYTQPGDYVKLSAKLLKKDSENFIEISVKDSGRGIPKEMKDKIFDSYFQVEKKDH 1004
            LSNAFK+T+    + +  +    D +  I I ++D+GRGI  E+ DK+FD ++Q  K  +
Sbjct: 946  LSNAFKFTEKNGSIHVKVE----DYDGRIAILIQDNGRGIHPEIGDKLFDKFYQAPKSYN 1001

Query: 1005 R--EGFGLGLSLTKSLIHMHKGEIKVESEVGKGSEFIVSLNVSESAYSSSEKSLESITSE 1062
               +GFG+GL L K  I  HKGE+   SE+G+G+ F + L       +      E  T  
Sbjct: 1002 VSVKGFGIGLYLAKKFITSHKGELTYHSEIGEGTVFRIELLKGLEHLAGITVHHED-TEF 1060

Query: 1063 EIQKYNLRMKETIELIP--DQLISTEQDN-TDVKESILIVEDNKEMNDYLAEIFSKDYQV 1119
             +   +L  +E  E +   +Q  S E DN    + +ILIV+DN+    Y+  IF + + +
Sbjct: 1061 IMPDLDLAEEEAEEPVTAMEQPDSGELDNLVSEQPAILIVDDNELFRQYIKRIFKESFII 1120

Query: 1120 FRAYNGAEACKLLKKQLPDLIVSDVMMPVMDGLELTAYVKQDLNSSHIPVILLTAKTDEL 1179
            + A +G +     KKQLPD+I+SDV MPV DG++L   +K D   SHIPVILLT+ T   
Sbjct: 1121 YEAVDGEDGLIKAKKQLPDIIISDVTMPVKDGIQLCTEIKADPAISHIPVILLTSSTSSE 1180

Query: 1180 DHTQGYLKGADAYITKPFNAQNLELLVQNMRTNRKQNIEYFKRIEKLNITQITNNPRDEV 1239
               +G   GA+ YITKPF A+ L   + N+  +R     YF     L       +P  + 
Sbjct: 1181 IKLKGLECGAEDYITKPFEAELLTARINNILKSRNSLQRYFYNAVTLQADNQKISPTFKE 1240

Query: 1240 FMKELVDLIMANIKDEEFGVTEIITHMKVSRSLLHTKLKSLTGCSITQFMRTIKM-KEAK 1298
            F+ + + +   ++ + +F    +   + +S S L+ K+KS++G SI +F+R I++ K A+
Sbjct: 1241 FLSKCISITERHLDNPDFNTKVLANEVGMSHSALYKKVKSISGKSINEFIRFIRLRKAAE 1300

Query: 1299 IHLQNGMNVSEASYAVGMSDPNYFTKCFKKEFNITPTEFIKQ 1340
            + +Q    V+EA++  G ++  YF + F K F +TP+E+IK+
Sbjct: 1301 LLIQTDSRVNEAAFRAGFNNQKYFREQFTKLFEMTPSEYIKK 1342



 Score = 39.7 bits (91), Expect = 2e-06
 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 4/63 (6%)

Query: 27  GKIQYN--NVRFKQLSITEGLSHNTVNAISQDSKGFMWFGTRNGLCRYDGYNIT--RYFH 82
           G ++YN  N  F+  + ++GLS+NTV  I +D    +W  T NGL +++  N T  +++ 
Sbjct: 553 GLLKYNSKNGSFQAFTESDGLSNNTVLNIEEDDHANLWLSTFNGLTKFNYRNNTFNKFYI 612

Query: 83  EEG 85
           E G
Sbjct: 613 ENG 615