Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 191 a.a., RNA polymerase sigma factor RpoE from Azospirillum brasilense Sp245

 Score = 60.5 bits (145), Expect = 2e-14
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 7/164 (4%)

Query: 11  REAFGQMFTEMYPRMVRYASQLMGDGEEARDIVSEVMEQAWKHFDQLD--EADRGGWIYT 68
           R AF  +F    PR+  Y  +   D   A ++V +VM   W+  +  D  +A    W++T
Sbjct: 28  RTAFAALFGHFAPRLKAYLRRQGCDAGGAEELVQDVMLLVWRRAETYDPTQASAATWVFT 87

Query: 69  AVRNTCLNRMKHLQVERDNAKALYEATLADVKSNYREHEALLQKAETIA---RSLPEPTC 125
             RN  ++ ++  Q  R          + D   +  +  A  + A  +    R+LP    
Sbjct: 88  IARNRRIDALRREQ--RPEIDPADPTLVPDPMESADDGVAARETAGRLRAALRTLPPEQA 145

Query: 126 TILRLCYYEHLTYREVAQQLGISPDTVKKHISKALRTLREAMKE 169
            +LRL Y+E   +  ++ + GI   TVK  +  A+  LR+AM++
Sbjct: 146 DLLRLAYFEDKPHSLISAEQGIPLGTVKSRLRLAMERLRKAMRD 189