Pairwise Alignments

Query, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 182 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score = 77.4 bits (189), Expect = 1e-19
 Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 7/162 (4%)

Query: 13  GDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHLLKEDENIKGFLF 72
           GD  AF  ++     +VY +     A+   A+E+ Q  F+K+W  RH L  D  +   LF
Sbjct: 11  GDQIAFEIVFKLSHKKVYAYFNKKTASKELADELTQLAFIKMWRFRHTLTPDFTLDTQLF 70

Query: 73  IVTRNIVFNKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCASQLKIFIDRLINSLP 132
            + +  + +  KK   E       L ++  +          DY  +Q    ++ ++N LP
Sbjct: 71  RIAKTTLLDHFKKLATEE----RKLKSFYQDNIAELYAPSSDYETNQQ---LEAVLNQLP 123

Query: 133 EQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFL 174
             ++K F+LSR E  SY EIAE+L IS +TVE H+  ALK L
Sbjct: 124 PTRKKVFILSRIEGYSYNEIAEQLSISPRTVEKHISLALKQL 165