Pairwise Alignments

Query, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 166 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score = 81.6 bits (200), Expect = 7e-21
 Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 15/165 (9%)

Query: 14  DHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHLLKEDENIKGFLFI 73
           ++Q FID +N +W  VY  +         A++I QD+F+ +W+     + +     +L  
Sbjct: 2   NNQQFIDFFNLHWGNVYGLALSKCGDEVIAKDICQDIFLSIWKREITFENEVEASKYLAR 61

Query: 74  VTRNIVFN--KNKKRVNENLFKTSVLVAYGNE----GYYNSTTVEEDYCASQLKIFIDRL 127
            T+  + N  +NKK+  E        V +G+E     Y     + +   + +L++FI   
Sbjct: 62  CTKYQILNFFRNKKQQEE-----ITDVNFGSEIEALRYNPEAMLLDKELSGELEVFI--- 113

Query: 128 INSLPEQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALK 172
            ++L E  +  FLLSRE+ LSYKEIA  LGI+ KTVE H+ + LK
Sbjct: 114 -SNLTEPTKSIFLLSREQQLSYKEIASELGIAVKTVEKHISRVLK 157