Pairwise Alignments

Query, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 192 a.a., RNA polymerase subunit sigma-70 from Pedobacter sp. GW460-11-11-14-LB5

 Score = 85.9 bits (211), Expect = 4e-22
 Identities = 47/171 (27%), Positives = 98/171 (57%), Gaps = 8/171 (4%)

Query: 10  IKGGDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHLLKEDENIKG 69
           +K GD  AF++++  Y++ +  ++   +    +AE++VQ+V+V LW     +  + ++  
Sbjct: 16  LKQGDKNAFVEIFERYYNLLIIYADKKLRNRQEAEDVVQEVYVSLWNRHESINIESSLAS 75

Query: 70  FLFIVTRNIVFNKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCASQLKIF--IDRL 127
           +L+   R  + +    +  E+ +  S+      + Y  + + + DY   + +I   I++ 
Sbjct: 76  YLYRAVRYEILDIFSHQKVEDKYLQSL------DTYAKNFSEQADYRVREKEIIEIINKQ 129

Query: 128 INSLPEQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLKDKV 178
           I+ LP + ++ FLLSR+E+LS++EIAE LG +++ V  H+ +ALK L+ K+
Sbjct: 130 IDLLPTKMKEVFLLSRKENLSHREIAEVLGTTEENVSRHITRALKILRTKL 180