Pairwise Alignments

Query, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 199 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score = 80.1 bits (196), Expect = 2e-20
 Identities = 53/174 (30%), Positives = 92/174 (52%), Gaps = 4/174 (2%)

Query: 2   NERERVLAIKGGDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHLL 61
           +ER+ +  I GGD QAF  L+ +Y   +  F+  +  +   AEEI+QD F+++W +R  L
Sbjct: 8   DERKLIEKIVGGDEQAFSVLFFKYLPVLQIFATKFTKSDDAAEEIIQDSFLRVWLNRDKL 67

Query: 62  KEDENIKGFLFIVTRNIVFNKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCASQLK 121
            E +N+K +L+    N   +  +K++ E+    +      N   +NST   E    +++ 
Sbjct: 68  AEVDNVKAYLYKYVSNECLSYLRKKLKEDRVVDAFTAKQQNS--HNSTV--ETINLNEVT 123

Query: 122 IFIDRLINSLPEQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLK 175
             I   +  LP+Q++  + LSR +  +  EIAE L IS  TV+  +  ALK ++
Sbjct: 124 KIIAIAVEKLPDQRKNIYQLSRRDGKTIPEIAEILNISPNTVKNALVTALKSIR 177