Pairwise Alignments

Query, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 188 a.a., RNA polymerase sigma-70 factor from Pedobacter sp. GW460-11-11-14-LB5

 Score =  102 bits (254), Expect = 4e-27
 Identities = 61/177 (34%), Positives = 101/177 (57%), Gaps = 4/177 (2%)

Query: 2   NERERVLAIKGGDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHLL 61
           N+   +  IK G+ QAF +++ +++  ++ ++   I    DAEEIVQ+VFV++W  R  L
Sbjct: 4   NDTHLIGLIKSGNKQAFDEVFLKHFKSLHAYAFTIIKEKDDAEEIVQNVFVRIWTKREQL 63

Query: 62  KEDENIKGFLFIVTRNIVFNKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCASQLK 121
           K D  +K FL+      V N++   +     +++  + Y +    ++  +  +  A++L+
Sbjct: 64  KTDGFLKSFLY----RSVHNESLNYLKHQKVRSNFNIHYADAVKNDTGNLNTEIMATELE 119

Query: 122 IFIDRLINSLPEQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLKDKV 178
             I   IN LPE+ R  F LSR + + Y+EIA+ L IS KTVE  MGKALK L+ +V
Sbjct: 120 KNIHSAINELPEKCRNVFQLSRFDQMKYQEIADALNISIKTVENQMGKALKILRLRV 176