Pairwise Alignments

Query, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 196 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score = 89.7 bits (221), Expect = 3e-23
 Identities = 59/179 (32%), Positives = 94/179 (52%), Gaps = 9/179 (5%)

Query: 10  IKGGDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHLLKEDENIKG 69
           ++  D  AF  +YN YWS++Y  +   +     +E+I+Q++FV LW  R     D N+  
Sbjct: 18  MQSNDRSAFEKIYNRYWSKLYLSAYHILRNKEASEDIIQEIFVSLWLKRAHTSVD-NLNN 76

Query: 70  FLFIVTRNIVFNKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCASQLKIFIDRLIN 129
           +LF   R  VF    K + +   +T +L  +  E   +    E  +   ++   +D  I 
Sbjct: 77  YLFTSVRFQVF----KAIRDGKLRTDLL--HDTELLVSPHNAENTFAEKEIAQRLDESIE 130

Query: 130 SLPEQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLKDKVKR--GWEILL 186
            LP++ ++ F+LSR+E LS KEIA+RL IS KTVE  +  AL+ L+  +     W ILL
Sbjct: 131 QLPQKCKEIFILSRKEHLSVKEIADRLNISPKTVENQITIALRRLRTDMGEFLFWAILL 189