Pairwise Alignments

Query, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 220 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score = 82.0 bits (201), Expect = 7e-21
 Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 6/173 (3%)

Query: 9   AIKGGDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHLLKEDENIK 68
           AIK G+ +AF  L++ Y+  +   +  Y+      E IVQD+F+ +W  R +L E  + K
Sbjct: 16  AIKFGNQKAFKILFDRYFPTLMATASHYLQDEQACENIVQDIFLNIWLKRDVL-EIRDFK 74

Query: 69  GFLFIVTRNIVFN--KNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCASQLKIFIDR 126
            +L    R  V+   ++KK     +F    L    NE  Y     EE    S LK  +  
Sbjct: 75  SYLKAAARYHVYKVIRSKKLAGSVIFTDENLE---NESAYAINNAEEWLNVSALKTQVSG 131

Query: 127 LINSLPEQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLKDKVK 179
            +  LP++ R+ FL+SREE+L+  EIAE+L IS+++VE  +  AL  L+  +K
Sbjct: 132 YLRMLPKRCREIFLMSREENLTNGEIAEKLNISKRSVENQITAALHHLRVNLK 184