Pairwise Alignments

Query, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 191 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score = 99.4 bits (246), Expect = 4e-26
 Identities = 55/176 (31%), Positives = 96/176 (54%), Gaps = 5/176 (2%)

Query: 3   ERERVLAIKGGDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHLLK 62
           + E ++ +K GD  AF  +Y+ ++  +Y  +   I T  DA +IV D+F  LW  R+ L 
Sbjct: 9   DNELIILLKNGDQNAFAQIYSRFFRPLYVHAYKKIGTDEDAIDIVHDLFEFLWTKRNEL- 67

Query: 63  EDENIKGFLFIVTRNIVFNKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCASQLKI 122
           E  N+  +LF   RN +F    +   +N++  S+        +     V E     +L  
Sbjct: 68  EISNLSAYLFAAIRNRIFTLKVRSDRKNIYLESLKDFINKGEFVTDAQVRE----RELAA 123

Query: 123 FIDRLINSLPEQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLKDKV 178
            I+R I++LP Q +K F++SR + +S+KEIA++LG S+ TV   + K+L+ L+ ++
Sbjct: 124 LIEREIDALPPQMKKVFVMSRTDGMSHKEIADQLGTSEHTVRTQVKKSLRILRSRI 179