Pairwise Alignments

Query, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 191 a.a., RNA polymerase subunit sigma-70 from Pedobacter sp. GW460-11-11-14-LB5

 Score =  102 bits (253), Expect = 6e-27
 Identities = 56/177 (31%), Positives = 96/177 (54%), Gaps = 8/177 (4%)

Query: 3   ERERVLAIKGGDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHLLK 62
           + E +  +K  D  A+ ++YN +W  +Y  ++  +    DAE++VQDVF+ LW    ++ 
Sbjct: 9   DHELLALLKTNDESAYKEIYNRFWFVLYGHAKRMLTDDEDAEDVVQDVFLTLWTKSEIID 68

Query: 63  EDENIKGFLFIVTRNIVFNKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYC--ASQL 120
              ++  +L+ V RN +F++      ++ +  S+      E +      E D+     QL
Sbjct: 69  LKTSLSSYLYTVVRNKIFDRFDHAKVKSKYIASL------EKFIERGNYEADFLIREKQL 122

Query: 121 KIFIDRLINSLPEQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLKDK 177
              I + IN LPE+ R+ F LSR  +LSY+EIAE+LG+S+  V   + +ALK L+ K
Sbjct: 123 HELIQQEINCLPEKMREIFKLSRHSNLSYQEIAEQLGVSEGVVRNQVSRALKILRSK 179