Pairwise Alignments

Query, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 201 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score = 87.4 bits (215), Expect = 1e-22
 Identities = 56/183 (30%), Positives = 101/183 (55%), Gaps = 6/183 (3%)

Query: 10  IKGGDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHLLKEDENIKG 69
           +K GD  AF +LY+ Y  Q+Y      +     AEEI+Q++F+K+W+ R  +  + + K 
Sbjct: 18  LKQGDQDAFSELYSIYSFQLYTNILKMVKDEHVAEEILQELFIKVWQKREHILTNTSFKS 77

Query: 70  FLFIVTRNIVFNKNKK-RVNENLFKTSVLVAYGNEGYYNSTTVEEDYCASQLKIFIDRLI 128
           FL+ V +N+V++  +K + ++ L+     VA  +  +     +EE     Q +  +D  +
Sbjct: 78  FLYRVGQNLVYDFFRKLQSDQKLYHNFKAVATQHYSH-----IEEALYLKQSEQALDLAL 132

Query: 129 NSLPEQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLKDKVKRGWEILLSL 188
           + L  QQR+ + L + E  +YKE AE L IS  TV+ ++ KA  F+K+ +    +I +++
Sbjct: 133 SKLSPQQRRVYKLCKIEGHTYKEAAEILNISSHTVKEYLVKANHFVKEYLLNNLDITMTV 192

Query: 189 LSF 191
           L F
Sbjct: 193 LLF 195