Pairwise Alignments

Query, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 188 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  115 bits (289), Expect = 4e-31
 Identities = 71/178 (39%), Positives = 100/178 (56%), Gaps = 10/178 (5%)

Query: 1   MNERERVLAIKGGDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHL 60
           + E+  + A+ GGD +AFI +Y  YW  +   +   +     A+++VQDVFV LWE R  
Sbjct: 7   ITEKSLLNALIGGDRKAFIQIYEYYWLPLLLHAERMLNDEQQAQDVVQDVFVMLWEKRDT 66

Query: 61  LKEDENIKGFLFIVTRNIVFNKNKK-RVNENLFKTSVLVAYGNEGYYNSTTVEEDYC--A 117
           L    +IKGFL+  TRN + N  KK +V  N F T   +A   E    S T++ DY    
Sbjct: 67  LIIQSSIKGFLYAATRNRILNVFKKEKVKANHFNT---LANSEE----SETIQTDYLIRE 119

Query: 118 SQLKIFIDRLINSLPEQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLK 175
            +L+  I+  I  LP + R  FLL R++ LSYKEI+  LGIS  TV+  M KA+K L+
Sbjct: 120 KELEALIESEIEKLPPKMRTVFLLKRKDQLSYKEISTTLGISDLTVKTQMNKAIKILR 177