Pairwise Alignments

Query, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 194 a.a., RNA polymerase subunit sigma-70 from Pedobacter sp. GW460-11-11-14-LB5

 Score = 87.4 bits (215), Expect = 1e-22
 Identities = 50/179 (27%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 2   NERERVLAIKGGDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHLL 61
           ++ E    +  GD  AF ++YN ++  ++  +   +    +A++++  +F  LW  R  +
Sbjct: 8   SDSELAFLLTQGDELAFTEIYNRFYGLLFIHASRRLNDEEEAKDVLHQLFESLWVKRLQV 67

Query: 62  KEDENIKGFLFIVTRNIVFNKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCA--SQ 119
             D N+  +L+   RN V +    +  E+ +  S+      + Y +   V  DY     Q
Sbjct: 68  APDGNLSAYLYTAVRNRVLDVFAHQKVESKYVDSL------QDYIDQDHVSTDYRVREKQ 121

Query: 120 LKIFIDRLINSLPEQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLKDKV 178
           + + I++ I++LP + R+ F+LSR+E+ S+KEIA  LG+S+ TV+  + KAL+ LK ++
Sbjct: 122 MALLIEQEIDALPPKMREIFILSRKENKSHKEIALELGLSELTVKTQVKKALRILKSRL 180