Pairwise Alignments

Query, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 191 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score = 83.6 bits (205), Expect = 2e-21
 Identities = 48/175 (27%), Positives = 96/175 (54%), Gaps = 4/175 (2%)

Query: 1   MNERERVLAIKGGDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHL 60
           + + E VL +K  +H AF +LYN YW +    +      + +AE IVQD+FV LW  R +
Sbjct: 9   LTDDELVLLLKESNHTAFEELYNRYWKKTLSLAVHKSGDLNEAENIVQDIFVSLWNRREV 68

Query: 61  LKEDENIKGFLFIVTRNIVFNKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCASQL 120
           L  + +   +LF+  +  V     K  +  +++ ++ V+   +   +ST    D+   +L
Sbjct: 69  LVINTSFNNYLFVSVKYRVIKFLDKLRSIRIYQENMAVS--ADVLDDSTQQYLDF--EEL 124

Query: 121 KIFIDRLINSLPEQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLK 175
           +  +++LI +LPE+    + ++++E +S++EIA+ L +++K V   + +  K L+
Sbjct: 125 RDRLEKLICALPEKTSLIYRMNKDEGMSHREIAQSLNMTEKAVNSQLVRTKKILR 179