Pairwise Alignments

Query, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 187 a.a., RNA polymerase subunit sigma-70 from Pedobacter sp. GW460-11-11-14-LB5

 Score = 82.8 bits (203), Expect = 3e-21
 Identities = 53/189 (28%), Positives = 101/189 (53%), Gaps = 10/189 (5%)

Query: 2   NERERVLAIKGGDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHLL 61
           N++E    +K GD  A+ ++Y+ Y + +Y  +   +    +  ++V ++F  LW  R  +
Sbjct: 7   NDQELADLLKSGDQLAYAEIYHRYHAALYIHAFKRLQLREECRDLVHELFTTLWIKREEI 66

Query: 62  KEDENIKGFLFIVTRNIVFNKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCA--SQ 119
                + G+L+   RN +F+   K+  +  +  S+      + +  +  V  DY    +Q
Sbjct: 67  TFKTTLSGYLYTSVRNKIFDLLAKQKLKKSYTQSI------QDFAETGFVTTDYLVRQNQ 120

Query: 120 LKIFIDRLINSLPEQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLKDKVK 179
           LK  ID+ I +LP + R+ F LSR+  LS++EIA+ L +S++TV+  +  AL+ L+ ++ 
Sbjct: 121 LKAIIDQEIANLPTRTRQIFELSRKNFLSHQEIAKVLNLSEQTVKTTINNALRVLRTRL- 179

Query: 180 RGWEILLSL 188
            G  + LSL
Sbjct: 180 -GSMMFLSL 187