Pairwise Alignments

Query, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 190 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score = 80.9 bits (198), Expect = 1e-20
 Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 6/174 (3%)

Query: 2   NERERVLAIKGGDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHLL 61
           ++ E +  I   D+ AF +LY+ YW QV++ +   I  I+ A++I QD+F +LW  R   
Sbjct: 10  SDAELLALISVSDNLAFNELYDRYWKQVFNAAYKQIKDISSAQDITQDIFTQLW-LRDKD 68

Query: 62  KEDENIKGFLFIVTRNIVFNKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCASQLK 121
            + EN+  +LF   RN  +    K+      ++S ++    E   +    ++     +  
Sbjct: 69  SKIENLSAYLFTAVRNQSYKLMAKQK-----RSSPILDVLMESEVSCYQADDQILYKEFL 123

Query: 122 IFIDRLINSLPEQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLK 175
              + LI++LPEQQ+  F     + L+  EI+ +L +S KTV  H+G+AL  LK
Sbjct: 124 CAYEALIDNLPEQQKIIFKKRFNQGLNTLEISTQLCLSPKTVRNHLGRALAKLK 177