Pairwise Alignments

Query, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 221 a.a., RNA polymerase sigma-70 factor from Pedobacter sp. GW460-11-11-14-LB5

 Score = 87.0 bits (214), Expect = 2e-22
 Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 5/165 (3%)

Query: 14  DHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHLLKEDENIKGFLFI 73
           D  AF  L+  ++  ++ ++++ +     AEEIVQ +F+K WE R  LK  ++IK +L+ 
Sbjct: 43  DDAAFEHLFKTHYHALHAYAQVILKDEDVAEEIVQGMFLKFWEKRESLKI-QSIKAYLYK 101

Query: 74  VTRNIVFNKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCASQLKIFIDRLINSLPE 133
              N   N  K+   ++ ++   + +   E    +  VE     ++L+  +   +N LPE
Sbjct: 102 CVYNDSLNYIKQEKTKSKYQEFTVHSMNTEHEPAAAKVE----FTELQQHLRDALNHLPE 157

Query: 134 QQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLKDKV 178
           Q R  F +SR E L Y+EIA+ LG+S KTVE  MGKAL+ L+ K+
Sbjct: 158 QCRTIFQMSRFEELKYREIADHLGLSIKTVENQMGKALRILRLKL 202