Pairwise Alignments

Query, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 198 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score = 91.7 bits (226), Expect = 8e-24
 Identities = 56/189 (29%), Positives = 100/189 (52%), Gaps = 6/189 (3%)

Query: 3   ERERVLAIKGGDHQAFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHLLK 62
           ER+ +L I  GD QAF  +++ Y ++V+ ++  Y+ +   AEE+VQ+ F+K+W  R  L 
Sbjct: 9   ERDLMLKIAVGDQQAFRLIFDAYKNKVFSYANRYLKSKERAEEVVQETFLKIWLKRESLG 68

Query: 63  EDENIKGFLFIVTRNIVFNKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCASQLKI 122
             EN  G++  +  N+  +  +    EN       V +  +     T  E+       + 
Sbjct: 69  TIENFGGYIRRIAVNLTLDSLRAIAAENKTTDLQKVVWMEQ----DTGTEDTIMRKDAES 124

Query: 123 FIDRLINSLPEQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLKDKVKRGW 182
           ++D+L++ LP+QQ   + +   E +  KE+AE L I+  TV++H+ +ALK L+  V +  
Sbjct: 125 YVDQLLDKLPKQQGLVYRMCHIEGMKQKEVAEILHIAPATVKVHLREALKTLRTMVDKNN 184

Query: 183 EILLSLLSF 191
            I   L+SF
Sbjct: 185 TI--PLISF 191