Pairwise Alignments

Query, 257 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 392 a.a., MerR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  137 bits (344), Expect = 4e-37
 Identities = 79/229 (34%), Positives = 112/229 (48%), Gaps = 3/229 (1%)

Query: 20  FKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFP 79
           F  L+R GPGS + + KA+S ++  T    I DIGCGTG  TL LAD     IT +D  P
Sbjct: 159 FATLERWGPGSHKDSLKAISLMSPQTM-TDILDIGCGTGTSTLLLADNSIAHITAVDNEP 217

Query: 80  DFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKY 139
             IE  N+    A   +R+  +  SM  LPFQ +  D IW+EG +Y +G E  + +W   
Sbjct: 218 IAIEQLNKKIQNAQLHERISPVCASMTELPFQAKSFDAIWAEGCVYIMGMENALKQWKPL 277

Query: 140 LKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHFILPEN 199
           LK  G + VS+  W T     E + FW+  YP+I  IP  +   ++ GY    HF L  +
Sbjct: 278 LKDNGVLMVSDLVWLTDSPDEETKQFWLADYPDIQSIPKRLTLFKKHGYDVIEHFSLGVD 337

Query: 200 CWTEHYFAPQDEVRETFMKEHAGNKTAMDFMKG-QQYERSLYSKYKDYY 247
            W ++Y+ P     E        ++  +D  K    YERS    +   Y
Sbjct: 338 AW-QNYWQPLQGRVEELQAVMPASQALLDIKKEISVYERSAAKDFTYQY 385