Pairwise Alignments

Query, 367 a.a., multidrug resistance protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 380 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score =  137 bits (344), Expect = 6e-37
 Identities = 107/365 (29%), Positives = 174/365 (47%), Gaps = 24/365 (6%)

Query: 11  LIGIVGCTVWMASCKQ--APDAGVKSSYAVMQIEPTDKELSSSYSATIRGRQDIDIYPQV 68
           L+ I+   V++A C++  AP A  K    ++ ++     +++      R  +  ++ PQV
Sbjct: 10  LMSILAMAVFLAGCQEEAAPPAQQKPKVGIVTLQAEPFAVTTELPGRTRAYRIAEVRPQV 69

Query: 69  SGTIEKLCVTEGQKVRRGQLLFIIDQVPYRAALKTATANVEAARAATSTAELTYKSNKEL 128
           +G I+K   TEG  V+ GQ L+ ID   Y A LK+A A+V ++           KS  + 
Sbjct: 70  NGIIQKRLFTEGSDVKAGQQLYQIDASVYEATLKSAQASVASS-----------KSLADR 118

Query: 129 YAQKVVSEFSLKTAENSYLTAKAQLAQAEAQEISARNNLSYTEVKSPSDGVVGALPYRAG 188
           YA+ V  +     ++ +Y  A+A   QAEA+   AR ++ YT+V +P  G VG      G
Sbjct: 119 YAELVKDQ---AVSKQAYDEARAASLQAEAELERARIDVRYTKVLAPISGRVGRSAVTEG 175

Query: 189 ALVSANIPYPLTTVSDNSDMYVYFSMTENQLLALTRQY--GDMDEALKNMPEVELILNDN 246
           ALVS      L T+     +YV  +     LLAL R    G + ++  N  +V L L D 
Sbjct: 176 ALVSNGQAQELATIQQLDPIYVDVTQPARDLLALRRDLAEGRLQKSGDNAAKVTLKLEDG 235

Query: 247 SVYQKKGTIESISGVIDRQTGTVVARVVFPNESR-LLHSGASGTVVVPSIYKNCIAIPQT 305
           S Y  +G +E     +D  TG+V  R VFPN  + LL        +V  +    I +PQ 
Sbjct: 236 SDYAHEGKLEFSEVTVDAGTGSVTLRAVFPNPDKDLLPGMFVHAQLVAGMKSEAILVPQQ 295

Query: 306 ATVRMQDKTIVYKVVDGKA---VSTLITVAGINDGREYVVLDGLKAGDEIVSEGAGLVRE 362
              R         VV+ ++   V  + T   +  G  ++V +GL+ GD +++EG   ++ 
Sbjct: 296 GVTRNTKGDPTAMVVNAESKVEVRPIKTERAV--GNRWLVGEGLQPGDRVITEGLQFIQP 353

Query: 363 GTQVK 367
           G +V+
Sbjct: 354 GVEVE 358