Pairwise Alignments

Query, 367 a.a., multidrug resistance protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 378 a.a., multidrug resistance protein AcrA/AcrE family (RefSeq) from Shewanella amazonensis SB2B

 Score =  154 bits (389), Expect = 4e-42
 Identities = 102/371 (27%), Positives = 182/371 (49%), Gaps = 12/371 (3%)

Query: 6   KKWIRLIGIVGCTVWMASCKQAPDAGVKSSY------AVMQIEPTDKELSSSYSATIRGR 59
           ++ +++   +G  +W+++C++                  +Q+    + +        R  
Sbjct: 2   RQMLKIASAIGMVLWVSACQEDAQQAANQQQMPPMEVGTVQVTAAPQNIMVELPGRSRAF 61

Query: 60  QDIDIYPQVSGTIEKLCVTEGQKVRRGQLLFIIDQVPYRAALKTATANVEAARAATSTAE 119
            + ++ PQVSG I +    EG++V+ GQ L+ ID   Y+A L++A A++ +A+A+ ++A+
Sbjct: 62  LEAEVRPQVSGIIMERNFVEGREVKEGQSLYKIDDATYKATLESAKADLASAQASLASAK 121

Query: 120 LTYKSNKELYAQKVVSEFSLKTAENSYLTAKAQLAQAEAQEISARNNLSYTEVKSPSDGV 179
                 ++L     +S+     A+ +Y  A A++  AEAQ  +A  NL+YTEV++P  G 
Sbjct: 122 ARAARYEKLVKTNAISKQDFDEADAAYKEALARVKVAEAQLHTANINLNYTEVQAPISGR 181

Query: 180 VGALPYRAGALVSANIPYPLTTVSDNSDMYVYFSMTENQLLALTRQYGDMDEALKNMPEV 239
           +G      GALV+AN    L T+     + V  + +  QLLAL  +         +  EV
Sbjct: 182 IGKSSVTPGALVTANQGQVLATIQQLDPINVDITQSSAQLLALKAKLRAGKLQAADNAEV 241

Query: 240 ELILNDNSVYQKKGTIESISGVIDRQTGTVVARVVFPNESRLLHSGASGTVVV-PSIYKN 298
           +L+L D + Y+ KG ++     +D  TG+V+ R  FPN   +L  G     ++   +  N
Sbjct: 242 QLVLEDGTTYEHKGKLQFAEVSVDENTGSVILRAEFPNPDNVLLPGMYVRAMLNTGVDPN 301

Query: 299 CIAIPQTATVRMQDKTIVYKVVDGKA---VSTLITVAGINDGREYVVLDGLKAGDEIVSE 355
            I +PQ A  R      V  VV+ ++     T+ T   IN   ++ +  GL AGD+++ E
Sbjct: 302 AILVPQKAITRNTRGEAVAMVVNAESKVEARTVTTAEVIN--HQWRITSGLNAGDKLIVE 359

Query: 356 GAGLVREGTQV 366
           G   +R G  V
Sbjct: 360 GLQKIRPGAPV 370