Pairwise Alignments

Query, 367 a.a., multidrug resistance protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 376 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score =  127 bits (319), Expect = 5e-34
 Identities = 89/357 (24%), Positives = 163/357 (45%), Gaps = 7/357 (1%)

Query: 15  VGCTVWMASCKQAPDAG----VKSSYAVMQIEPTDKELSSSYSATIRGRQDIDIYPQVSG 70
           +   + +A+C Q  +       +    V  ++P   +L+  +    +    ++I P++SG
Sbjct: 10  ISLPILLAACSQQAEVDGEFTEQPKVTVQVMQPQLIQLTEQFMGKTQAVDQVEILPKISG 69

Query: 71  TIEKLCVTEGQKVRRGQLLFIIDQVPYRAALKTATANVEAARAATSTAELTYKSNKELYA 130
            +     T+G  V++G LLF ID  P++A +    AN+    A        ++  + L  
Sbjct: 70  YLISQVYTDGAHVKKGDLLFEIDPKPFQAEVARLEANLAQKTAQMMLQAKKHEKAQALLT 129

Query: 131 QKVVSEFSLKTAENSYLTAKAQLAQAEAQEISARNNLSYTEVKSPSDGVVGALPYRAGAL 190
           Q  +S   ++  E   L  KA++  A+A+   A+ +L  T + +P +G++       GAL
Sbjct: 130 QDALSSLEVEQIEAELLGMKAEVQSAKAELNYAQLDLENTHIYAPFNGIMSDSRVSVGAL 189

Query: 191 VSANIPYPLTTVSDNSDMYVYFSMTENQLLALTRQYGDMDEALKNMPEVELILNDNSVYQ 250
           V  +   PLTT+  +  M+V   + E Q L   ++     E + + PE+ L L + ++Y 
Sbjct: 190 VGPDAE-PLTTLVSSDAMHVDIKLDEKQYLNDLQKRVQAGEEIAS-PEMALTLANGTLYN 247

Query: 251 KKGTIESISGVIDRQTGTVVARVVFPNESRLLHSGASGTVVV-PSIYKNCIAIPQTATVR 309
            KG ++ I   +D ++G++  RV FPN   LL  G   +V     + +  + +PQ     
Sbjct: 248 HKGEVDFIDNHVDSRSGSIRFRVTFPNPEGLLVPGQFVSVSSREQVAQQQLVVPQAVVQE 307

Query: 310 MQDKTIVYKVVDGKAVSTLITVAGINDGREYVVLDGLKAGDEIVSEGAGLVREGTQV 366
            Q    V  V     V       G+     ++V DGL+AG+ ++  G   VR G +V
Sbjct: 308 DQGGRYVLTVNQDNVVEARYVKLGLRQANTWIVQDGLQAGERVILSGLQSVRAGVEV 364