Pairwise Alignments

Query, 367 a.a., multidrug resistance protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 386 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score =  144 bits (362), Expect = 5e-39
 Identities = 103/367 (28%), Positives = 169/367 (46%), Gaps = 10/367 (2%)

Query: 9   IRLIGIVGCTVWMASCKQAPDAGVKSS------YAVMQIEPTDKELSSSYSATIRGRQDI 62
           +++  +V   +W+  C Q  + G  ++        V+Q+    + +        +   + 
Sbjct: 5   VKIASLVSVALWITGCGQDENQGHSAAAPRSMEVGVVQVVEQPQAIQVELPGRSKAYLEA 64

Query: 63  DIYPQVSGTIEKLCVTEGQKVRRGQLLFIIDQVPYRAALKTATANVEAARAATSTAELTY 122
           ++ PQVSG I +    EG +V  GQ L+ ID   Y+AAL +A A++  A A+  +A+   
Sbjct: 65  EVRPQVSGIITERGFVEGGEVTEGQSLYQIDSSTYKAALVSAEADLARANASLVSAKAKA 124

Query: 123 KSNKELYAQKVVSEFSLKTAENSYLTAKAQLAQAEAQEISARNNLSYTEVKSPSDGVVGA 182
              K L     +S+     A+  Y  A A +  A+A   +A+ NL YT+VK+P  G +G 
Sbjct: 125 ARYKALIKTDAISQQDFDEADALYKEALANVTVAKAAINTAKINLEYTQVKAPISGRIGK 184

Query: 183 LPYRAGALVSANIPYPLTTVSDNSDMYVYFSMTENQLLALTRQYGDMDEALKNMPEVELI 242
               AGALV+AN    L T+     + V  + +  QLL L  +         +  +V LI
Sbjct: 185 SSVTAGALVTANQSAALATIQQLDPINVDIAQSSAQLLRLKAKLKQGQLQAADNADVRLI 244

Query: 243 LNDNSVYQKKGTIESISGVIDRQTGTVVARVVFPNESRLLHSGASGTVVV-PSIYKNCIA 301
           L D + Y+  G++      +D  TG+V  R  FPN   +L  G     V+        I 
Sbjct: 245 LEDGTAYEHMGSLRFAEVSVDENTGSVTLRAEFPNPDGVLLPGMYVRAVLNAGTDPKAIL 304

Query: 302 IPQTATVRMQDKTIVYKVV--DGKAVSTLITVAGINDGREYVVLDGLKAGDEIVSEGAGL 359
           +PQ A  R      V  V+  + K    ++T A + D  ++ +  GLKAGD+++ EG   
Sbjct: 305 VPQKAVTRNTKGQAVAMVIGAESKVEPRVVTTAEVID-HQWRITSGLKAGDQLIVEGLQK 363

Query: 360 VREGTQV 366
           +R G  V
Sbjct: 364 IRPGAPV 370