Pairwise Alignments

Query, 367 a.a., multidrug resistance protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 382 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  155 bits (393), Expect = 1e-42
 Identities = 109/371 (29%), Positives = 180/371 (48%), Gaps = 11/371 (2%)

Query: 6   KKWIRLIGIVGCTVWMASCKQAPD------AGVKS-SYAVMQIEPTDKELSSSYSATIRG 58
           ++ I+L  ++   +WMA+C    D      AG +S    V+ +    + +        + 
Sbjct: 2   RQTIKLASVISVALWMAACSPQEDKAAQAGAGPQSMEVGVINVAAKPQVIQVELPGRSKA 61

Query: 59  RQDIDIYPQVSGTIEKLCVTEGQKVRRGQLLFIIDQVPYRAALKTATANVEAARAATSTA 118
             + ++ PQVSG + K    EG  V++G+ L+ ID  PY+AAL +A A++  A A+ ++A
Sbjct: 62  FLEAEVRPQVSGIVTKRSFVEGGHVKQGESLYQIDSAPYKAALVSANADLARANASLASA 121

Query: 119 ELTYKSNKELYAQKVVSEFSLKTAENSYLTAKAQLAQAEAQEISARNNLSYTEVKSPSDG 178
           +      ++L     +S+     AE +Y  A A +  AEA   +A+ NL YTEV +P  G
Sbjct: 122 KAKAARYQQLVKTNAISKQDFDEAEAAYKEALASVTVAEAAINTAKINLEYTEVLAPISG 181

Query: 179 VVGALPYRAGALVSANIPYPLTTVSDNSDMYVYFSMTENQLLALTRQYGDMDEALKNMPE 238
            +G     AGALV+AN    L T+     + V  + +  QLL L  +         +  +
Sbjct: 182 RIGKSSVTAGALVTANQSQTLATIQQLDPINVDIAQSSAQLLRLKAKLQQGKLQAADNAD 241

Query: 239 VELILNDNSVYQKKGTIESISGVIDRQTGTVVARVVFPNESRLLHSGASGTVVV-PSIYK 297
           V+L+L D +VY   G ++     +D  TG+V+ R  FPN   LL  G     V+      
Sbjct: 242 VQLVLEDGTVYGHSGKLQFAEVSVDENTGSVILRAEFPNPDGLLLPGMYVRAVLNTGTDP 301

Query: 298 NCIAIPQTATVRMQDKTIVYKVVDGKAV--STLITVAGINDGREYVVLDGLKAGDEIVSE 355
             I +PQ A  R      V  VV+ + V  + ++T A + D  ++ +  GL+AGD+++ E
Sbjct: 302 QAILVPQKAISRNAKGQAVAMVVNDQGVVEAKIVTTAEVID-NQWRITAGLEAGDKLIVE 360

Query: 356 GAGLVREGTQV 366
           G   +R G  V
Sbjct: 361 GLQKIRPGAPV 371