Pairwise Alignments

Query, 640 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 609 a.a., RagB/SusD family nutrient uptake outer membrane protein from Parabacteroides merdae CL09T00C40

 Score =  117 bits (294), Expect = 1e-30
 Identities = 155/652 (23%), Positives = 261/652 (40%), Gaps = 102/652 (15%)

Query: 20  DSFLDIVPDDIATIDNAFTMRAQAEKYLFTCYYYLPAHGLLEANPA--IAGGDELYITES 77
           D FL+  P +   ID  ++    A   L++ Y  L  +GL   N    + G D L   + 
Sbjct: 29  DDFLEKAPSNDVDIDVIYSNAQYARTALWSAYATLH-YGLNLGNQGNQLMGSDPL---DC 84

Query: 78  FRSAAHVHAWYISHNMQSSARPRCDYWTGADQQNNK-----SLYQ-----GISDCNIFLE 127
                + + W    +  S A    +    AD +NN      S YQ     GI    +F+E
Sbjct: 85  LTDLVYSNVWT---DGVSGAAIHYNGTYSADYENNGYSSKYSYYQRPCWLGIRRAWLFIE 141

Query: 128 NIQKVPDMTQAEKDRWAAEVRFLKAYYHYWLIRMYGPIPIMDQNIPVNAGEEEVKVFRNT 187
           N+ +VPDM +AEK R  AE + + A ++  L R YG +PI+D     N   E+++  R T
Sbjct: 142 NVDRVPDMKEAEKQRLKAEAKVIIAMHYCDLFRHYGGVPIVDHAYTAN---EDMQKERGT 198

Query: 188 IDECFDYVINTLTEIIDSNHLPDKIMNEAEELGRITQGIAMAIRAEVMVTAASPLFNGNA 247
           + E  D+++N L E  D            E  GR+T+  AM ++A +++ AASPLFN + 
Sbjct: 199 VQETLDFIVNLLDEAADVLPWAMSAAENREWEGRLTKASAMGLKARILLFAASPLFNSSE 258

Query: 248 DY-KGYTDSRGIEIFNPNKSEQDKKQRWIDAAEACKQAIEFLKAQGHDLYKYTSLEYTIS 306
            Y  G    + +  F   K E      W  A  A K   + L   G         +Y + 
Sbjct: 259 PYMPGEAADKRLMWFGSYKPE-----LWTQALAAHKAFFDELNKNG---------QYGLV 304

Query: 307 DQTRAKMNIRNIVTEKWNQEIIWANSNSIIGQLQDHAIPRGLEPGKEGNASVG--GNLAV 364
            ++  +   R+   ++   E       +II     + +P     G     + G  G    
Sbjct: 305 YKSDPRQAFRSGYLDRGTGE-------AIIATHYGYTVPDYWTWGWSYYETAGDAGTACG 357

Query: 365 PLKIADLFYTKNGVPITEDKTWNYDDRLELRKATSDDKYFIKEGYTTASINFDREVRYYA 424
             ++ D+F   +G+PITE K +             D K+  ++          R+ R Y 
Sbjct: 358 TQELVDMFPMIDGLPITESKLY-------------DPKHPYEQ----------RDPRLYE 394

Query: 425 SLGFDGAVWFGQGVTDETKPIYVQCKQGQSAANQISNSWNETGIWPKKLV---HFKSVVG 481
           ++  +G  ++G G+ +    IYV  K  Q      S     +G  P+K +       +  
Sbjct: 395 TVVVNGDKYYG-GIAE----IYVGGKHYQDFEG--SYGAFMSGYRPRKFILDGGGGPLFE 447

Query: 482 QTSGFTKITYPFPVMRLGNLYLLYAEALNESGASKTDVLTWVDLIRERAGLEGVEESWDT 541
             +  +     +P +RL  LYL YAEA+ ++          V+ +R+R  +  ++     
Sbjct: 448 WPAEISGKVVQWPYLRLPELYLGYAEAICQTNGDMALAYECVNKLRDRVNIGHLKAG--- 504

Query: 542 YTNNKKYETVDGRREIIQQERGIELAFEAQRFWDLRRWKLAYQEQNKPITGWNTQYSTNE 601
             N K +       E +  ER  E A+E  R++D+ R+K     Q  P     T+     
Sbjct: 505 -LNKKDF------LETLMNERVCEFAYEEVRWFDMIRYKRVDIFQKTPHRVVITKDPETS 557

Query: 602 DYYTEQLIYAQ-------------EFRIRNYFWPILDKELYSNKNLVQNYGW 640
           ++  E  ++               +F  + Y       E+  +  L+QN GW
Sbjct: 558 EFKYEYKLFKPAENGELRQWANPGKFSPKWYLSAFPSNEINKSYGLIQNPGW 609